BAC Information

Click to search

BAC

Clone NameB6Ng01-349A11
Chromosome1 (Build37)
Map Location 195,174,124 - 195,293,472
singlet/doubletdoublet
Overlap geneCamk1g
Upstream geneKcnh1, Hhat, A730013G03Rik, Sertad4, LOC100039677, Syt14, AA408296, Irf6, A130010J15Rik, Traf3ip3, Hsd11b1, G0s2, Lamb3
Downstream geneLOC667208
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-349A11.bB6Ng01-349A11.g
ACCGA130139GA130140
length1,2161,154
definitionB6Ng01-349A11.b B6Ng01-349A11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(195,292,242 - 195,293,472)(195,174,124 - 195,175,277)
sequence
gaattcactatatgttgtgtgaatatgagaatactaataattaagattag
aataaagaatttgcatttgccttggccaggctaccaaaacgggtagattt
ttttgacaaattgctaccattgaaacagttaagccttgtgaattaatcat
tattcaataaattctgacactgtgagaagacacaaacttgttcccctaag
cttttggcatagcatgctcatgacaagtggtgcagaacacaggtcatgaa
gaactttgcagctttcttaaaacacccttgtctgccttctgttacacatg
tggcaacattgtctgtcttctgttacacatgtggcaacattatcttcctt
ctgaactagtgatctttctaagagctctaactcaccagcttctcgtgcac
tgcaactctcctgtcctgcacgcctttaattccagcactcgggaggcaga
ggcaggcagatttctgagttcgaggtcagcctggtctacaaagtgagttc
caggacagccagggctatacagagaaaccctgtctcgaaaaaccaaaggg
gaaaaaaacaaaacaaaacaaaacaaaaaaaaatcttctacttcttcatc
aaataattcctcctgcaggcaagcaaggagagctgcccttgactagagaa
aaccttttatgattacattttgaagaggggtggagtaggactcctcctgg
gaggagaaagtgaggggttttgtagttatttgtagaaaggaaggcagtct
tctctgtactctggatgttccttggcacttaaaagcaatgccatttactt
acaaattacagtggtcttgatgcaaatgagccactccaggactgtttcct
ctatcccagattagctaagaagtggtggagaaattgaccaaggatgcagg
atgctgagcctgacctgaggtctattaaaatcaagctcctggtttaatta
ttcccatttctgaagcaagatgcaattagaacctagcaaactggcagagg
agattttgctttgatttatgtggcttcaaaggctacacacagagagggca
tttgacctgacagttgaagaaggtgctggagagcagagacagcagtccag
ctgactcacccaggacacccagaaagattggaggtgaccactgagtcttg
ccttgagttcctgttaacgagagagcatctcttggcctctttatgaagag
tctgggaggaatatta
gaattctttccaccctgcagctacctattagtggacctggcctttgcagt
cacattcttcagcaagtcattcctgtcccttctgaaacagatgatcaggg
tgaggcttgttgcctgagactacgtactgttttttattggcctttctgaa
gagggtaggctcagagcagtaggaagactttcccttgttcccaatattta
gacagctggagcagcagccacagggccccgtggctagggggccctgttgc
atgggcactaggctactgctgatgcgcagggagccgttgaccaggcagtt
gagtgagcggccaccactgggagctgaaggccgggagctgtgtgagcagg
gtagtcgggtcagtgcaggaaggggtgtgcttgggtccaggatgggggcc
tctgtgatggagctgtcatgggagtctggtctggagacttcaggagcagg
ggacacaggtggcctgttctccacctcttggcggacactggggctgtgca
ggttcatgtgcagtttcctcatgtgatgcaccaccgcagctgcgttgaag
gcttgctgaggaagcagggaaagtgtctggttgtgctcttgcagaggctg
ctgggttcctgctttcttctccctgggggctctggaaaccaccctgccca
cttcccagttcacagagagcaacacagcgagctgctgttgtctgggagag
ggatgccctgggaaacccttccaccagccccagaccgtccagcctcccag
ggcccaggacagcatgctcagcctctgagcacagctcaccctccacttgc
tcttggcaaagttcttctgaatctggaggctgacagatggatagatgtcc
cggtgcaggctgtgtttccatcaatcctagcatgtaggaggagacttggt
taccaggtggccctggtactcagtcagaggttggacagggctctgtgcat
gcagggccatgttgagttgatagatacccgaggagagggttgactccagc
aggacagggctcctagatctcctgggcaggtcatagggctttagcttagc
aattcagaaccttttagaaacgaagtttgcaaactggtgtccttggggga
ccaatctgtccatcactgcttttgcaagtgattagctccactggggtggc
agct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_195292242_195293472
seq2: B6Ng01-349A11.b_49_1264 (reverse)

seq1  TAATATTCCCTCCCAGACTTCTCATAAAGAGGGC-AGAGATGGCTCTCTC  49
      ||||||| |||||||||||  ||||||||||| | |||||||   |||||
seq2  TAATATT-CCTCCCAGACTCTTCATAAAGAGGCCAAGAGATG---CTCTC  46

seq1  TGTTTAACAGAGAAACTCAGGGCAAAGGGACTCAGTGGTTCACCT-CAAT  98
      |  |||||  || |||||| |||||   |||||||||| |||||| ||||
seq2  TCGTTAAC--AGGAACTCAAGGCAA---GACTCAGTGG-TCACCTCCAAT  90

seq1  TCTTCTGGGTGTCTGGGGTTGAGTCCAGCCTGGACTGCTGTCTCTGCTCT  148
        |||||||||||  ||| ||||| ||| |||||||||||||||||||||
seq2  CTTTCTGGGTGTCCTGGG-TGAGT-CAG-CTGGACTGCTGTCTCTGCTCT  137

seq1  -CAGCAACTTCTTCAAACTGTCAGGTCAAATGCCCTCTCCTGTTGTGTAG  197
       ||||| ||||||| ||||||||||||||||||||||| ||| |||||||
seq2  CCAGCACCTTCTTC-AACTGTCAGGTCAAATGCCCTCT-CTG-TGTGTAG  184

seq1  CCTTTGAAGCCACATAAATCAAAGCAAAATCCTCCTCCTGCCAGTTTGCT  247
      |||||||||||||||||||||||||||||| ||||| |||||||||||||
seq2  CCTTTGAAGCCACATAAATCAAAGCAAAAT-CTCCT-CTGCCAGTTTGCT  232

seq1  AGGTTCTAATTGCATCTTGCTTCAGAAATGGGAATAATTAAACCAGGAGC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCTAATTGCATCTTGCTTCAGAAATGGGAATAATTAAACCAGGAGC  282

seq1  TTGATTTTAATAGACCTCAGGTCAGGCTCAGCATCCTGCATCCTTGGTCA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTTAATAGACCTCAGGTCAGGCTCAGCATCCTGCATCCTTGGTCA  332

seq1  ATTTCTCCACCACTTCTTAGCTAATCTGGGATAGAGGAAACAGTCCTGGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCCACCACTTCTTAGCTAATCTGGGATAGAGGAAACAGTCCTGGA  382

seq1  GTGGCTCATTTGCATCAAGACCACTGTAATTTGTAAGTAAATGGCATTGC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTCATTTGCATCAAGACCACTGTAATTTGTAAGTAAATGGCATTGC  432

seq1  TTTTAAGTGCCAAGGAACATCCAGAGTACAGAGAAGACTGCCTTCCTTTC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGTGCCAAGGAACATCCAGAGTACAGAGAAGACTGCCTTCCTTTC  482

seq1  TACAAATAACTACAAAACCCCTCACTTTCTCCTCCCAGGAGGAGTCCTAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATAACTACAAAACCCCTCACTTTCTCCTCCCAGGAGGAGTCCTAC  532

seq1  TCCACCCCTCTTCAAAATGTAATCATAAAAGGTTTTCTCTAGTCAAGGGC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCCCTCTTCAAAATGTAATCATAAAAGGTTTTCTCTAGTCAAGGGC  582

seq1  AGCTCTCCTTGCTTGCCTGCAGGAGGAATTATTTGATGAAGAAGTAGAAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTCCTTGCTTGCCTGCAGGAGGAATTATTTGATGAAGAAGTAGAAG  632

seq1  ATTTTTTTTTGTTTTGTTTTGTTTTGTTTTTTTCCCCTTTGGTTTTTCGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTTTGTTTTGTTTTGTTTTGTTTTTTTCCCCTTTGGTTTTTCGA  682

seq1  GACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGA  732

seq1  CCAGGCTGACCTCGAACTCAGAAATCTGCCTGCCTCTGCCTCCCGAGTGC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTGACCTCGAACTCAGAAATCTGCCTGCCTCTGCCTCCCGAGTGC  782

seq1  TGGAATTAAAGGCGTGCAGGACAGGAGAGTTGCAGTGCACGAGAAGCTGG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATTAAAGGCGTGCAGGACAGGAGAGTTGCAGTGCACGAGAAGCTGG  832

seq1  TGAGTTAGAGCTCTTAGAAAGATCACTAGTTCAGAAGGAAGATAATGTTG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTAGAGCTCTTAGAAAGATCACTAGTTCAGAAGGAAGATAATGTTG  882

seq1  CCACATGTGTAACAGAAGACAGACAATGTTGCCACATGTGTAACAGAAGG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATGTGTAACAGAAGACAGACAATGTTGCCACATGTGTAACAGAAGG  932

seq1  CAGACAAGGGTGTTTTAAGAAAGCTGCAAAGTTCTTCATGACCTGTGTTC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAAGGGTGTTTTAAGAAAGCTGCAAAGTTCTTCATGACCTGTGTTC  982

seq1  TGCACCACTTGTCATGAGCATGCTATGCCAAAAGCTTAGGGGAACAAGTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCACTTGTCATGAGCATGCTATGCCAAAAGCTTAGGGGAACAAGTT  1032

seq1  TGTGTCTTCTCACAGTGTCAGAATTTATTGAATAATGATTAATTCACAAG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTTCTCACAGTGTCAGAATTTATTGAATAATGATTAATTCACAAG  1082

seq1  GCTTAACTGTTTCAATGGTAGCAATTTGTCAAAAAAATCTACCCGTTTTG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAACTGTTTCAATGGTAGCAATTTGTCAAAAAAATCTACCCGTTTTG  1132

seq1  GTAGCCTGGCCAAGGCAAATGCAAATTCTTTATTCTAATCTTAATTATTA  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCTGGCCAAGGCAAATGCAAATTCTTTATTCTAATCTTAATTATTA  1182

seq1  GTATTCTCATATTCACACAACATATAGTGAATTC  1231
      ||||||||||||||||||||||||||||||||||
seq2  GTATTCTCATATTCACACAACATATAGTGAATTC  1216

seq1: chr1_195174124_195175277
seq2: B6Ng01-349A11.g_68_1221

seq1  GAATTCTTTCCACCCTGCAGCTACCTATTAGTGGACCTGGCCTTTGCAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCACCCTGCAGCTACCTATTAGTGGACCTGGCCTTTGCAGT  50

seq1  CACATTCTTCAGCAAGTCATTCCTGTCCCTTCTGAAACAGATGATCAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTCTTCAGCAAGTCATTCCTGTCCCTTCTGAAACAGATGATCAGGG  100

seq1  TGAGGCTTGTTGCCTGAGACTACGTACTGTTTTTTATTGGCCTTTCTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCTTGTTGCCTGAGACTACGTACTGTTTTTTATTGGCCTTTCTGAA  150

seq1  GAGGGTAGGCTCAGAGCAGTAGGAAGACTTTCCCTTGTTCCCAATATTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTAGGCTCAGAGCAGTAGGAAGACTTTCCCTTGTTCCCAATATTTA  200

seq1  GACAGCTGGAGCAGCAGCCACAGGGCCCCGTGGCTAGGGGGCCCTGTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCTGGAGCAGCAGCCACAGGGCCCCGTGGCTAGGGGGCCCTGTTGC  250

seq1  ATGGGCACTAGGCTACTGCTGATGCGCAGGGAGCCGTTGACCAGGCAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCACTAGGCTACTGCTGATGCGCAGGGAGCCGTTGACCAGGCAGTT  300

seq1  GAGTGAGCGGCCACCACTGGGAGCTGAAGGCCGGGAGCTGTGTGAGCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAGCGGCCACCACTGGGAGCTGAAGGCCGGGAGCTGTGTGAGCAGG  350

seq1  GTAGTCGGGTCAGTGCAGGAAGGGGTGTGCTTGGGTCCAGGATGGGGGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTCGGGTCAGTGCAGGAAGGGGTGTGCTTGGGTCCAGGATGGGGGCC  400

seq1  TCTGTGATGGAGCTGTCATGGGAGTCTGGTCTGGAGACTTCAGGAGCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGATGGAGCTGTCATGGGAGTCTGGTCTGGAGACTTCAGGAGCAGG  450

seq1  GGACACAGGTGGCCTGTTCTCCACCTCTTGGCGGACACTGGGGCTGTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACAGGTGGCCTGTTCTCCACCTCTTGGCGGACACTGGGGCTGTGCA  500

seq1  GGTTCATGTGCAGTTTCCTCATGTGATGCACCACCGCAGCTGCGTTGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCATGTGCAGTTTCCTCATGTGATGCACCACCGCAGCTGCGTTGAAG  550

seq1  GCTTGCTGAGGAAGCAGGGAAAGTGTCTGGTTGTGCTCTTGCAGAGGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCTGAGGAAGCAGGGAAAGTGTCTGGTTGTGCTCTTGCAGAGGCTG  600

seq1  CTGGGTTCCTGCTTTCTTCTCCCTGGGGGCTCTGGAAACCACCCTGCCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTTCCTGCTTTCTTCTCCCTGGGGGCTCTGGAAACCACCCTGCCCA  650

seq1  CTTCCCAGTTCACAGAGAGCAACACAGCGAGCTGCTGTTGTCTGGGAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCAGTTCACAGAGAGCAACACAGCGAGCTGCTGTTGTCTGGGAGAG  700

seq1  GGATGCCCTGGGAAACCCTTCCACCAGCCCCAGACCGTCCAGCCTCCCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCCCTGGGAAACCCTTCCACCAGCCCCAGACCGTCCAGCCTCCCAG  750

seq1  GGCCCAGGACAGCATGCTCAGCCTCTGAGCACAGCTCACCCTCCACTTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCAGGACAGCATGCTCAGCCTCTGAGCACAGCTCACCCTCCACTTGC  800

seq1  TCTTGGCAAAGTTCTTCTGAATCTGGAGGCTGACAGATGGATAGATGTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGCAAAGTTCTTCTGAATCTGGAGGCTGACAGATGGATAGATGTCC  850

seq1  CGGTGCAGGGCTGTGTTTCCATCAATCCTAGCATGTAGGAGGAGACTTGG  900
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGCA-GGCTGTGTTTCCATCAATCCTAGCATGTAGGAGGAGACTTGG  899

seq1  TTACCAGGTGGCCCTGGTACTCAGTCAGAGGTTGGACAGGGCTCTGTGCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCAGGTGGCCCTGGTACTCAGTCAGAGGTTGGACAGGGCTCTGTGCA  949

seq1  TGCAGGGCCATGTTGAGTTGATAAGATACCCGAGGAGAGGGGTGACTCCA  1000
      |||||||||||||||||||||| |||||||||||||||||| ||||||||
seq2  TGCAGGGCCATGTTGAGTTGAT-AGATACCCGAGGAGAGGGTTGACTCCA  998

seq1  GCAGGACAGGGCTCCTAGATCTTCCTGGGCAGGTCATAGGGGCTTAAGCT  1050
      ||||||||||||||||||||| |||||||||||||||| |||||| ||| 
seq2  GCAGGACAGGGCTCCTAGATC-TCCTGGGCAGGTCATA-GGGCTTTAGC-  1045

seq1  TTAGCAAATCAGAACCTTTTAG-AACAGAGTTGGCAAACT-GTGGCCTT-  1097
      ||||||| |||||||||||||| |||  |||| ||||||| ||| |||| 
seq2  TTAGCAATTCAGAACCTTTTAGAAACGAAGTTTGCAAACTGGTGTCCTTG  1095

seq1  GGGGACCAATCTGTCCATCACTTGCTTTTTGCAAGTGA-TAGCT-CACTG  1145
      ||||||||||||||||||||| ||| |||||||||||| ||||| |||||
seq2  GGGGACCAATCTGTCCATCAC-TGC-TTTTGCAAGTGATTAGCTCCACTG  1143

seq1  GG--TGCAGCT  1154
      ||   ||||||
seq2  GGGTGGCAGCT  1154