BAC Information

Click to search

BAC

Clone NameB6Ng01-349F01
Chromosome1 (Build37)
Map Location 157,199,156 - 157,306,702
singlet/doubletdoublet
Overlap geneXpr1
Upstream geneCacna1e, LOC671336, Ier5, Mr1, Stx6, EG667867, BC034090
Downstream geneEG433367, Acbd6, Lhx4, Qscn6, Cep350, LOC676894, Tor1aip1, Ifrg15, Tor1aip2, A230106N23Rik, Tdrd5, Nphs2, 9430070O13Rik, LOC100038991
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-349F01.bB6Ng01-349F01.g
ACCGA130343GA130344
length1,188774
definitionB6Ng01-349F01.b B6Ng01-349F01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(157,199,156 - 157,200,327)(157,305,932 - 157,306,702)
sequence
gaattctgcctggcttctgtggtcctaaataggaatctctgagctgagtc
tgtctttgaggttttatcacataaagttctaaccaaatgtggctttaaat
attcttggcagaacacagagcaaaaagtctttgaaatcatagtagtgata
cgtaacaaatgaaattaatctcatctgtatagtagctttaatacaatcta
agatattaattatgctaataaatgtgtgcctgatatctactagacaaaca
agtttccatgtgaaattctgacaaatacatccaaacagggcatcactcaa
cagtaaagtgagctggtgagcctagcgatattcacaagttttttgctctt
gtaacgcctaaaagatttgagtctatcttacacttttctaagttaagaca
aaggatatttaacaatttaagtagttagagacaatgtaatttctgttgga
gtgtgattaaaacaacactgtgagaaaaaatttaatggaatttaaatgca
cagtaatttaatcactactaccaaaattcactattactttcaaatacaca
aataaaaggactagggacacagggcagcagtagagcacttgccaagcaag
tctatagccttgggttcaatactcagtactgcagaaaagccaaaagcact
tgtcaaacacatgaaaacaagatcttttaacactgaaattcatatatgtt
ttcttcttgaacttatatttccattctattcagattacaaattttatgtt
aatatatttttatgtttagtcatttactaaacataccaccatatttcctc
agcattaaatattcatatgaattaaaatttaaatactaaaacttttctaa
taactatcttttaaatattaaaatttctcctgcactgagctaatacaatt
attagaatgtactatatcaaaacaacattaatatttacaaatattaaaga
taaatggcatcattgaggatatgaataataaatctcatattgaaatggat
ggaagcctcctccaaactcattcataaatcctttgaatagtgtatatggg
ttactagaaagaataaaatttattttacttgcaagaataattgattatta
taattgcccagcaccaattcttaaataggtgtgaaaagatccatcctcct
ccccattggaaatcgaatcgggtgtgaggagaaagctt
gaattctatttgcccaggtccaacatgggttggcttgtttggttccttgt
ggacagtccaaagccctggagcactagatgcctcgctgccttctgcaagt
gtgttctagcagatagatggcttcccatttccagcacagctgaggggtgg
gtgggcttatttggctccaggcaggatcaactcttgttggaaatctgtgt
gatttcaagggacaactggtcattccagatggaagagggaagcccatatc
ggacctggtctgtgtgtgttccctccagcagggatgatttcttgttaggg
atttctttcttttctctatgggttagcccctgctcaagaagaaaagccct
tgatgggttaatgagttgccttgccgggcacactgaatcatctgtcttgt
gtttctcactaaatgagaagctttaacagctcagaatggaggtgttgaga
agagtgtttctagccgatagcaagctgttgagatgcctgggcctgtcatc
ctgtcatccaaaggcagttccacaggagggtattttccaaaggactcctt
tcagcttctgtccattggctggccattcaaaacacatatttacttgccta
attgcttttcaaaatcttagttactgcagttttactgttttgcaggagca
actaatagtcatccactttgacccttctcctcctcccccccgccagaaag
atcaatatcatcaatttttttcatttcttactacatctgtgtgtgtgtgt
gtgtgtgtgtgtgtgtgatgtgcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_157199156_157200327
seq2: B6Ng01-349F01.b_48_1235

seq1  GAATTCTGCCTGGCTTCTGTGGTCCTAAATAGGAATCTCTGAGCTGAGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCCTGGCTTCTGTGGTCCTAAATAGGAATCTCTGAGCTGAGTC  50

seq1  TGTCTTTGAGGTTTTATCACATAAAGTTCTAACCAAATGTGGCTTTAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTGAGGTTTTATCACATAAAGTTCTAACCAAATGTGGCTTTAAAT  100

seq1  ATTCTTGGCAGAACACAGAGCAAAAAGTCTTTGAAATCATAGTAGTGATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTGGCAGAACACAGAGCAAAAAGTCTTTGAAATCATAGTAGTGATA  150

seq1  CGTAACAAATGAAATTAATCTCATCTGTATAGTAGCTTTAATACAATCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAACAAATGAAATTAATCTCATCTGTATAGTAGCTTTAATACAATCTA  200

seq1  AGATATTAATTATGCTAATAAATGTGTGCCTGATATCTACTAGACAAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATTAATTATGCTAATAAATGTGTGCCTGATATCTACTAGACAAACA  250

seq1  AGTTTCCATGTGAAATTCTGACAAATACATCCAAACAGGGCATCACTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCCATGTGAAATTCTGACAAATACATCCAAACAGGGCATCACTCAA  300

seq1  CAGTAAAGTGAGCTGGTGAGCCTAGCGATATTCACAAGTTTTTTGCTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAAGTGAGCTGGTGAGCCTAGCGATATTCACAAGTTTTTTGCTCTT  350

seq1  GTAACGCCTAAAAGATTTGAGTCTATCTTACACTTTTCTAAGTTAAGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACGCCTAAAAGATTTGAGTCTATCTTACACTTTTCTAAGTTAAGACA  400

seq1  AAGGATATTTAACAATTTAAGTAGTTAGAGACAATGTAATTTCTGTTGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATATTTAACAATTTAAGTAGTTAGAGACAATGTAATTTCTGTTGGA  450

seq1  GTGTGATTAAAACAACACTGTGAGAAAAAATTTAATGGAATTTAAATGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGATTAAAACAACACTGTGAGAAAAAATTTAATGGAATTTAAATGCA  500

seq1  CAGTAATTTAATCACTACTACCAAAATTCACTATTACTTTCAAATACACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAATTTAATCACTACTACCAAAATTCACTATTACTTTCAAATACACA  550

seq1  AATAAAAGGACTAGGGACACAGGGCAGCAGTAGAGCACTTGCCAAGCAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAGGACTAGGGACACAGGGCAGCAGTAGAGCACTTGCCAAGCAAG  600

seq1  TCTATAGCCTTGGGTTCAATACTCAGTACTGCAGAAAAGCCAAAAGCACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAGCCTTGGGTTCAATACTCAGTACTGCAGAAAAGCCAAAAGCACT  650

seq1  TGTCAAACACATGAAAACAAGATCTTTTAACACTGAAATTCATATATGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAACACATGAAAACAAGATCTTTTAACACTGAAATTCATATATGTT  700

seq1  TTCTTCTTGAACTTATATTTCCATTCTATTCAGATTACAAATTTTATGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTTGAACTTATATTTCCATTCTATTCAGATTACAAATTTTATGTT  750

seq1  AATATATTTTTATGTTTAGTCATTTACTAAACATACCACCATATTTCCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATTTTTATGTTTAGTCATTTACTAAACATACCACCATATTTCCTC  800

seq1  AGCATTAAATATTCATATGAATTAAAATTTAAATACTAAAACTTTTCTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTAAATATTCATATGAATTAAAATTTAAATACTAAAACTTTTCTAA  850

seq1  TAACTATCTTTTAAATATTAAAATTTCTCCTGCACTGAGCTAATACAATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTATCTTTTAAATATTAAAATTTCTCCTGCACTGAGCTAATACAATT  900

seq1  ATTAGAATGTACTATATCAAAACAACATTAATATTTACAAATATTAAAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAATGTACTATATCAAAACAACATTAATATTTACAAATATTAAAGA  950

seq1  TAAAATGGCATCATTGAGGATATGAAT-ATAAATCTCATATTGAAATGGA  999
      | ||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  T-AAATGGCATCATTGAGGATATGAATAATAAATCTCATATTGAAATGGA  999

seq1  TGGA--GCTCCTCCAAACTCATTCATAAATCCTTTGATAAGTGTTATAT-  1046
      ||||   ||||||||||||||||||||||||||||||  |||| ||||| 
seq2  TGGAAGCCTCCTCCAAACTCATTCATAAATCCTTTGAATAGTG-TATATG  1048

seq1  GGTTACTAGAAAG-ATAAAATTTA-TTTACTTGCAAGAATAATGGA-TAT  1093
      ||||||||||||| |||||||||| |||||||||||||||||| || |||
seq2  GGTTACTAGAAAGAATAAAATTTATTTTACTTGCAAGAATAATTGATTAT  1098

seq1  TAT-ATTG-CCAGCAC--ATTC-TAAATA-GTGTG-AAAGAT-CAT-CTC  1134
      ||| |||| |||||||  |||| |||||| ||||| |||||| ||| |||
seq2  TATAATTGCCCAGCACCAATTCTTAAATAGGTGTGAAAAGATCCATCCTC  1148

seq1  TCCCATTTTGGAAATCGTATC-CGTGTGAGGAG-AAGCTT  1172
        ||   |||||||||| |||  |||||||||| ||||||
seq2  CTCCCCATTGGAAATCGAATCGGGTGTGAGGAGAAAGCTT  1188

seq1: chr1_157305932_157306702
seq2: B6Ng01-349F01.g_67_840 (reverse)

seq1  CACACA-CACACACACACACACACACACACACACACAGATGTAGTAAG-A  48
      | |||| ||||||||||||||||||||||||||||||||||||||||| |
seq2  CGCACATCACACACACACACACACACACACACACACAGATGTAGTAAGAA  50

seq1  ATGAAAAAAATTGATGATATTGATCTTTCTGGCGGGGGGGAGGAGGAGAA  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAAAATTGATGATATTGATCTTTCTGGCGGGGGGGAGGAGGAGAA  100

seq1  GGGTCAAAGTGGATGACTATTAGTTGCTCCTGCAAAACAGT-AAACTGCA  147
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GGGTCAAAGTGGATGACTATTAGTTGCTCCTGCAAAACAGTAAAACTGCA  150

seq1  GTAACTAAGATTTTGAAAAGCAATTAGGCAAGTAAATATGTGTTTTGAAT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTAAGATTTTGAAAAGCAATTAGGCAAGTAAATATGTGTTTTGAAT  200

seq1  GGCCAGCCAATGGACAGAAGCTGAAAGGAGTCCTTTGGAAAATACCCTCC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGCCAATGGACAGAAGCTGAAAGGAGTCCTTTGGAAAATACCCTCC  250

seq1  TGTGGAACTGCCTTTGGATGACAGGATGACAGGCCCAGGCATCTCAACAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAACTGCCTTTGGATGACAGGATGACAGGCCCAGGCATCTCAACAG  300

seq1  CTTGCTATCGGCTAGAAACACTCTTCTCAACACCTCCATTCTGAGCTGTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTATCGGCTAGAAACACTCTTCTCAACACCTCCATTCTGAGCTGTT  350

seq1  AAAGCTTCTCATTTAGTGAGAAACACAAGACAGATGATTCAGTGTGCCCG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTTCTCATTTAGTGAGAAACACAAGACAGATGATTCAGTGTGCCCG  400

seq1  GCAAGGCAACTCATTAACCCATCAAGGGCTTTTCTTCTTGAGCAGGGGCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGCAACTCATTAACCCATCAAGGGCTTTTCTTCTTGAGCAGGGGCT  450

seq1  AACCCATAGAGAAAAGAAAGAAATCCCTAACAAGAAATCATCCCTGCTGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCATAGAGAAAAGAAAGAAATCCCTAACAAGAAATCATCCCTGCTGG  500

seq1  AGGGAACACACACAGACCAGGTCCGATATGGGCTTCCCTCTTCCATCTGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAACACACACAGACCAGGTCCGATATGGGCTTCCCTCTTCCATCTGG  550

seq1  AATGACCAGTTGTCCCTTGAAATCACACAGATTTCCAACAAGAGTTGATC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACCAGTTGTCCCTTGAAATCACACAGATTTCCAACAAGAGTTGATC  600

seq1  CTGCCTGGAGCCAAATAAGCCCACCCACCCCTCAGCTGTGCTGGAAATGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGGAGCCAAATAAGCCCACCCACCCCTCAGCTGTGCTGGAAATGG  650

seq1  GAAGCCATCTATCTGCTAGAACACACTTGCAGAAGGCAGCGAGGCATCTA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCATCTATCTGCTAGAACACACTTGCAGAAGGCAGCGAGGCATCTA  700

seq1  GTGCTCCAGGGCTTTGGACTGTCCACAAGGAACCAAACAAGCCAACCCAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCCAGGGCTTTGGACTGTCCACAAGGAACCAAACAAGCCAACCCAT  750

seq1  GTTGGACCTGGGCAAATAGAATTC  771
      ||||||||||||||||||||||||
seq2  GTTGGACCTGGGCAAATAGAATTC  774