BAC Information

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BAC

Clone NameB6Ng01-349J09
Chromosome1 (Build37)
Map Location 84,476,918 - 84,586,604
singlet/doubletdoublet
Overlap geneDner
Upstream gene5033414K04Rik, LOC100039638
Downstream geneTrip12, Fbxo36, Slc16a14, LOC100039695, EG665317, LOC100039723, A530032D15Rik, LOC100039742, LOC100040158, LOC621835, EG665378, C130026I21Rik, LOC100040135, LOC639868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-349J09.bB6Ng01-349J09.g
ACCGA130540GA130541
length511507
definitionB6Ng01-349J09.b B6Ng01-349J09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,476,918 - 84,477,434)(84,586,092 - 84,586,604)
sequence
aggagctttcaaccacgagattagcaagacatttcttagaccttcagaga
ctagcagcctgatagaaattgtcaaccatcacacacacacacagacacac
acacacacagacacacacatacacacacatgattctcgggactggatacc
taagattgaccctaatcatccttcctgagccttctgtcttttcagttgtt
agtttgtttgcatgtcttttggttggttggttggttggttttgggttttt
tgtttttgtttttaatctcataaccagacagtcaaaactcaataagcagt
agacaggaatttgaatgggacaaaatattaaaatctctttgagttttcta
tctatcctgctgaaagtaggatggtcacgtttttagagaagcatgccaaa
cagtcacagcactttccgggcctgtgacagtgggaacagacacccagaga
agcatgcttatgtttaagaaagacttgagtgtgccagtgctgagggaaaa
gtgacctagtg

cttttctggacaaaagtgctgtgacatttggaccctggcttcactgtttg
gctgtctctcagcatggggctgccagttgtgttcaaagccattcctgtgg
gcaacacagacacacactaggaagcaaaagatgctaggcctccctcttcc
tgtcatccctagggcatttcctttcctctcccatggtcacccacacagga
gagtagactccaggcttcctctgatacttactctttctcagcttcccatt
gctccaaactcagggagccagagctaagcttgctgtggttccatcctaaa
gggcaggtgtagactctgagcatttcaggactgcatggtccttcccatcc
cactcctcagcgggcctctgatgaagagatatgcttgattctttaagttg
agagctttgccatgccagcaaaacactccgagtttggatcccaagccctt
aggctgtaccgggtggcttgtgactgtgagcccagcactggggtggggtg
ggggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_84476918_84477434
seq2: B6Ng01-349J09.b_46_562

seq1  GAATTCAGGAGCTTTCAACCACGAGATTAGCAAGACATTTCTTAGACCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGAGCTTTCAACCACGAGATTAGCAAGACATTTCTTAGACCTT  50

seq1  CAGAGACTAGCAGCCTGATAGAAATTGTCAACCATCACACACACACACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACTAGCAGCCTGATAGAAATTGTCAACCATCACACACACACACAG  100

seq1  ACACACACACACACAGACACACACATACACACACATGATTCTCGGGACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACAGACACACACATACACACACATGATTCTCGGGACTG  150

seq1  GATACCTAAGATTGACCCTAATCATCCTTCCTGAGCCTTCTGTCTTTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACCTAAGATTGACCCTAATCATCCTTCCTGAGCCTTCTGTCTTTTCA  200

seq1  GTTGTTAGTTTGTTTGCATGTCTTTTGGTTGGTTGGTTGGTTGGTTTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTAGTTTGTTTGCATGTCTTTTGGTTGGTTGGTTGGTTGGTTTTGG  250

seq1  GTTTTTTGTTTTTGTTTTTAATCTCATAACCAGACAGTCAAAACTCAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTGTTTTTGTTTTTAATCTCATAACCAGACAGTCAAAACTCAATA  300

seq1  AGCAGTAGACAGGAATTTGAATGGGACAAAATATTAAAATCTCTTTGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTAGACAGGAATTTGAATGGGACAAAATATTAAAATCTCTTTGAGT  350

seq1  TTTCTATCTATCCTGCTGAAAGTAGGATGGTCACGTTTTTAGAGAAGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATCTATCCTGCTGAAAGTAGGATGGTCACGTTTTTAGAGAAGCAT  400

seq1  GCCAAACAGTCACAGCACTTTCCGGGCCTGTGACAGTGGGAACAGACACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAACAGTCACAGCACTTTCCGGGCCTGTGACAGTGGGAACAGACACC  450

seq1  CAGAGAAGCATGCAGATGTTTAAGAAAGACTTGAGTGTGCCAGTGCTGAG  500
      |||||||||||||  |||||||||||||||||||||||||||||||||||
seq2  CAGAGAAGCATGCTTATGTTTAAGAAAGACTTGAGTGTGCCAGTGCTGAG  500

seq1  GGAAAAGTGACCTAGTG  517
      |||||||||||||||||
seq2  GGAAAAGTGACCTAGTG  517


seq1: chr1_84586092_84586604
seq2: B6Ng01-349J09.g_68_580 (reverse)

seq1  CCACCCCCACCCCACCCCAGTGCTGGGCTCACAGTCACAAGCCACCCGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCCACCCCACCCCAGTGCTGGGCTCACAGTCACAAGCCACCCGGT  50

seq1  ACAGCCTAAGGGCTTGGGATCCAAACTCGGAGTGTTTTGCTGGCATGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCTAAGGGCTTGGGATCCAAACTCGGAGTGTTTTGCTGGCATGGCA  100

seq1  AAGCTCTCAACTTAAAGAATCAAGCATATCTCTTCATCAGAGGCCCGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCTCAACTTAAAGAATCAAGCATATCTCTTCATCAGAGGCCCGCTG  150

seq1  AGGAGTGGGATGGGAAGGACCATGCAGTCCTGAAATGCTCAGAGTCTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTGGGATGGGAAGGACCATGCAGTCCTGAAATGCTCAGAGTCTACA  200

seq1  CCTGCCCTTTAGGATGGAACCACAGCAAGCTTAGCTCTGGCTCCCTGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCCTTTAGGATGGAACCACAGCAAGCTTAGCTCTGGCTCCCTGAGT  250

seq1  TTGGAGCAATGGGAAGCTGAGAAAGAGTAAGTATCAGAGGAAGCCTGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGCAATGGGAAGCTGAGAAAGAGTAAGTATCAGAGGAAGCCTGGAG  300

seq1  TCTACTCTCCTGTGTGGGTGACCATGGGAGAGGAAAGGAAATGCCCTAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTCTCCTGTGTGGGTGACCATGGGAGAGGAAAGGAAATGCCCTAGG  350

seq1  GATGACAGGAAGAGGGAGGCCTAGCATCTTTTGCTTCCTAGTGTGTGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACAGGAAGAGGGAGGCCTAGCATCTTTTGCTTCCTAGTGTGTGTCT  400

seq1  GTGTTGCCCACAGGAATGGCTTTGAACACAACTGGCAGCCCCATGCTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGCCCACAGGAATGGCTTTGAACACAACTGGCAGCCCCATGCTGAG  450

seq1  AGACAGCCAAACAGTGAAGCCAGGGTCCAAATGTCACAGCACTTTTGTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCCAAACAGTGAAGCCAGGGTCCAAATGTCACAGCACTTTTGTCC  500

seq1  AGAAAAGGAATTC  513
      |||||||||||||
seq2  AGAAAAGGAATTC  513


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