BAC Information

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BAC

Clone NameB6Ng01-349L03
Chromosome1 (Build37)
Map Location 84,033,928 - 84,141,576
singlet/doubletdoublet
Overlap gene5033414K04Rik
Upstream geneSlc19a3, LOC621495, A030005K14Rik, 5530401N06Rik, EG665272, Ccl20, LOC100039575, 4930563E19Rik, EG621614, 4930544G21Rik, EG622958
Downstream geneLOC100039638, Dner, Trip12, Fbxo36, Slc16a14, LOC100039695, EG665317, LOC100039723, A530032D15Rik, LOC100039742
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-349L03.bB6Ng01-349L03.g
ACCGA130613GA130614
length1,1531,125
definitionB6Ng01-349L03.b B6Ng01-349L03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,140,463 - 84,141,576)(84,033,928 - 84,035,047)
sequence
gaattcacttgtcttggggcaattagatctttcgataaagaatttagcat
tgcaatacatagcaacagaccaaacctcaacaattcttccttataaaata
acatttagaggttccagctttgggatctaatgtctttgagtgacattatt
gagctggtcaaagatgaccttgtaattagggaattctagagattcaattc
acgattgtttctcaatatgtattatcatattgtctcctgatctcttgagg
gctccagaattccagggtgtgtaaatatcttgcttgtatgagatcagaca
gtatcttcatctgatccatgcagagttctcctaaacacttttaaatatct
ctggattacttacgatacgttgtacagttccaacattgtccagatggttg
cttttctgtgctggctatggaataatgacattgctagaacagatgtgtgg
ggtttgttatttttaaaagacattttgatcaacagttgagtggatctata
tctgcagagcccatgaatggatagggcttaatatatagtaatacatgcat
atatatggaatataatacatataaataatgtttatatatagctcattgtt
tagattgtttgccatttcttgagcctcagaaacttctttcattgggattt
agaaaaccctttttttaaaaattaggtattttcttcatttacatttcaaa
tgctatcccaaaagtcccccataccctctcccccccaactcccctatcca
cccactcccacttcttggccctggtgttcccctgcactaaggcataaaaa
ctcttaaaactagaaaggtaaggaagattattctgtggaaagagcatctt
gccattatgttccttgaaatgatttttgttttattcttcatttcttttct
gcaaaagagtgtctttagaattctatatggggtgaggatgcagaaagatg
ggtgtagtggttaacaacctatagtacttttattgaggccctggtttgtc
tcctatcattatggtgacttacactattgtgtaactctacttcaggaaag
ctatgttttttttctggcctccacagatacacatatggtgtaacataacc
acacacgcagcacttacatttaaaattaaataagtcctttaagaaataaa
caa
gaattctaagaaaatagaagaagtgaatacaataggagggtactacttga
tatattcgtgtaaataaaaagcattatctttaactgcgaattaactgcca
tctagcgcgctgttagttgtaaagctcaatccaagctgtgctgattcacg
gactgaggagaggatctgcaaacatgccaagggggaggagcaaccagtca
gtcacctggacgtgtcccttccatcctgcagcctccacgccaacagcacc
tccccatacctcctgcctgcctagggaccacagagatgccactaacattc
ttgttggatttcataaggcagattggaacagtccgtcaaactacagccat
ggagtatttgcctgagaatggtgaaaataggcgtggagatctcccagcag
gaagtgttggaataggagaggaaaaaaaaagtgagaggagagtctggaac
cttcctccccatctgtactctcctcaagatcacggcagcagcaggtttca
atgtcacataattaatgatatgattctttagatttagaatcactcttctg
aatttaaaaagcatgatcagccaataggttggcagtcctttcgtaccaaa
tttgaatcattgcagacatgtctagcttctgaaactccttgcccaaatgc
tgccttcgctggaacatcttaagttccttcagccatcatcagattccaat
tcctgggaagcctcttcagatgagctgctcctatggatccgcccatcact
cttcatactgtggaaagtcttcttgaatgcctccatcatggcgtgtgcca
gcttcttggcctccagcttgctctcacattgcactgcatggcagtccatc
tggtaagagaggtcatcattgatctctctgtacacccaggcgaagatgtt
ggggctcacgttgtggtcagctgtgcagtaggcaatttcgagccacctgg
aaggtattccatgttgcactgttgcctcacccttgtggtcaaggtgatga
agccacacttggaatggccggatctctaggagggcgttgggccggaaaac
attctttttcgagcaggtggtgtgtttcttccagaagctcatgactgctt
ctcgggtgcacaagacaaaaactgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_84140463_84141576
seq2: B6Ng01-349L03.b_91_1203 (reverse)

seq1  TTGTTTTAATTTCTTAAA-GACTTATTT-ATTTTAAATGTAAGTGCCTGC  48
      ||||||  |||||||||| ||||||||| |||||||||||||||| ||||
seq2  TTGTTT--ATTTCTTAAAGGACTTATTTAATTTTAAATGTAAGTG-CTGC  47

seq1  GTGTGTG--TATG-TACACCATATGTGTATCTGTGGAGGCCAGAAAAAAA  95
      |||||||  |||| ||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGGTTATGTTACACCATATGTGTATCTGTGGAGGCCAGAAAAAAA  97

seq1  CATTAGCTTTCCCTGAAGTTAGAGTTACAC-ATAGTTGTAAGTCACCATA  144
         ||||||| ||||||| ||||||||||| |||| ||||||||||||||
seq2  ACATAGCTTT-CCTGAAG-TAGAGTTACACAATAG-TGTAAGTCACCATA  144

seq1  TGGATAGGAGAACAAACCAGGGCCCTCAATAAAAGTACTATAGGTTGTTA  194
        |||||||| ||||||||||| |||||||||||||||||||||||||||
seq2  ATGATAGGAG-ACAAACCAGGG-CCTCAATAAAAGTACTATAGGTTGTTA  192

seq1  ACCACTACA-CCATCTTTCTGCATCCTCACCCCATATAGAATTCTAAAGA  243
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTACACCCATCTTTCTGCATCCTCACCCCATATAGAATTCTAAAGA  242

seq1  CACTCTTTTGCAGAAAAGAAATGAAGAATAAAACAAAAATCATTTCAAGG  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTTTTGCAGAAAAGAAATGAAGAATAAAACAAAAATCATTTCAAGG  292

seq1  AACATAATGGCAAGATGCTCTTTCCACAGAATAATCTTCCTTACCTTTCT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAATGGCAAGATGCTCTTTCCACAGAATAATCTTCCTTACCTTTCT  342

seq1  AGTTTTAAGAGTTTTTATGCCTTAGTGCAGGGGAACACCAGGGCCAAGAA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTAAGAGTTTTTATGCCTTAGTGCAGGGGAACACCAGGGCCAAGAA  392

seq1  GTGGGAGTGGGTGGATAGGGGAGTTGGGGGGGAGAGGGTATGGGGGACTT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAGTGGGTGGATAGGGGAGTTGGGGGGGAGAGGGTATGGGGGACTT  442

seq1  TTGGGATAGCATTTGAAATGTAAATGAAGAAAATACCTAATTTTTAAAAA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGATAGCATTTGAAATGTAAATGAAGAAAATACCTAATTTTTAAAAA  492

seq1  AAGGGTTTTCTAAATCCCAATGAAAGAAGTTTCTGAGGCTCAAGAAATGG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTTTTCTAAATCCCAATGAAAGAAGTTTCTGAGGCTCAAGAAATGG  542

seq1  CAAACAATCTAAACAATGAGCTATATATAAACATTATTTATATGTATTAT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAATCTAAACAATGAGCTATATATAAACATTATTTATATGTATTAT  592

seq1  ATTCCATATATATGCATGTATTACTATATATTAAGCCCTATCCATTCATG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCATATATATGCATGTATTACTATATATTAAGCCCTATCCATTCATG  642

seq1  GGCTCTGCAGATATAGATCCACTCAACTGTTGATCAAAATGTCTTTTAAA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTGCAGATATAGATCCACTCAACTGTTGATCAAAATGTCTTTTAAA  692

seq1  AATAACAAACCCCACACATCTGTTCTAGCAATGTCATTATTCCATAGCCA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACAAACCCCACACATCTGTTCTAGCAATGTCATTATTCCATAGCCA  742

seq1  GCACAGAAAAGCAACCATCTGGACAATGTTGGAACTGTACAACGTATCGT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGAAAAGCAACCATCTGGACAATGTTGGAACTGTACAACGTATCGT  792

seq1  AAGTAATCCAGAGATATTTAAAAGTGTTTAGGAGAACTCTGCATGGATCA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAATCCAGAGATATTTAAAAGTGTTTAGGAGAACTCTGCATGGATCA  842

seq1  GATGAAGATACTGTCTGATCTCATACAAGCAAGATATTTACACACCCTGG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAGATACTGTCTGATCTCATACAAGCAAGATATTTACACACCCTGG  892

seq1  AATTCTGGAGCCCTCAAGAGATCAGGAGACAATATGATAATACATATTGA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGGAGCCCTCAAGAGATCAGGAGACAATATGATAATACATATTGA  942

seq1  GAAACAATCGTGAATTGAATCTCTAGAATTCCCTAATTACAAGGTCATCT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAATCGTGAATTGAATCTCTAGAATTCCCTAATTACAAGGTCATCT  992

seq1  TTGACCAGCTCAATAATGTCACTCAAAGACATTAGATCCCAAAGCTGGAA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCAGCTCAATAATGTCACTCAAAGACATTAGATCCCAAAGCTGGAA  1042

seq1  CCTCTAAATGTTATTTTATAAGGAAGAATTGTTGAGGTTTGGTCTGTTGC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTAAATGTTATTTTATAAGGAAGAATTGTTGAGGTTTGGTCTGTTGC  1092

seq1  TATGTATTGCAATGCTAAATT  1114
      |||||||||||||||||||||
seq2  TATGTATTGCAATGCTAAATT  1113

seq1: chr1_84033928_84035047
seq2: B6Ng01-349L03.g_68_1192

seq1  GAATTCTAAGAAAATAGAAGAAGTGAATACAATAGGAGGGTACTACTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAGAAAATAGAAGAAGTGAATACAATAGGAGGGTACTACTTGA  50

seq1  TATATTCGTGTAAATAAAAAGCATTATCTTTAACTGCGAATTAACTGCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTCGTGTAAATAAAAAGCATTATCTTTAACTGCGAATTAACTGCCA  100

seq1  TCTAGCGCGCTGTTAGTTGTAAAGCTCAATCCAAGCTGTGCTGATTCACG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCGCGCTGTTAGTTGTAAAGCTCAATCCAAGCTGTGCTGATTCACG  150

seq1  GACTGAGGAGAGGATCTGCAAACATGCCAAGGGGGAGGAGCAACCAGTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAGGAGAGGATCTGCAAACATGCCAAGGGGGAGGAGCAACCAGTCA  200

seq1  GTCACCTGGACGTGTCCCTTCCATCCTGCAGCCTCCACGCCAACAGCACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCTGGACGTGTCCCTTCCATCCTGCAGCCTCCACGCCAACAGCACC  250

seq1  TCCCCATACCTCCTGCCTGCCTAGGGACCACAGAGATGCCACTAACATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCATACCTCCTGCCTGCCTAGGGACCACAGAGATGCCACTAACATTC  300

seq1  TTGTTGGATTTCATAAGGCAGATTGGAACAGTCCGTCAAACTACAGCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGGATTTCATAAGGCAGATTGGAACAGTCCGTCAAACTACAGCCAT  350

seq1  GGAGTATTTGCCTGAGAATGGTGAAAATAGGCGTGGAGATCTCCCAGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTATTTGCCTGAGAATGGTGAAAATAGGCGTGGAGATCTCCCAGCAG  400

seq1  GAAGTGTTGGAATAGGAGAGGAAAAAAAAAGTGAGAGGAGAGTCTGGAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGTTGGAATAGGAGAGGAAAAAAAAAGTGAGAGGAGAGTCTGGAAC  450

seq1  CTTCCTCCCCATCTGTACTCTCCTCAAGATCACGGCAGCAGCAGGTTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCCCCATCTGTACTCTCCTCAAGATCACGGCAGCAGCAGGTTTCA  500

seq1  ATGTCACATAATTAATGATATGATTCTTTAGATTTAGAATCACTCTTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCACATAATTAATGATATGATTCTTTAGATTTAGAATCACTCTTCTG  550

seq1  AATTTAAAAAGCATGATCAGCCAATAGGTTGGCAGTCCTTTCGTACCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAAAAGCATGATCAGCCAATAGGTTGGCAGTCCTTTCGTACCAAA  600

seq1  TTTGAATCATTGCAGACATGTCTAGCTTCTGAAACTCCTTGCCCAAATGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATCATTGCAGACATGTCTAGCTTCTGAAACTCCTTGCCCAAATGC  650

seq1  TGCCTTCGCTGGAACATCTTAAGTTCCTTCAGCCATCATCAGATTCCAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTCGCTGGAACATCTTAAGTTCCTTCAGCCATCATCAGATTCCAAT  700

seq1  TCCTGGGAAGCCTCTTCAGATGAGCTGCTCCTATGGATCCGCCCATCACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGGAAGCCTCTTCAGATGAGCTGCTCCTATGGATCCGCCCATCACT  750

seq1  CTTCATACTGTGGAAAGTCTTCTTGAATGCCTCCATCATGGCGTGTGCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATACTGTGGAAAGTCTTCTTGAATGCCTCCATCATGGCGTGTGCCA  800

seq1  GCTTCTTGGCCTCCAGCTTGCTCTCACATTGCACTGCATGGCAGTCCATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTTGGCCTCCAGCTTGCTCTCACATTGCACTGCATGGCAGTCCATC  850

seq1  TGGTAAGAGAGGTCATCATTGATCTCTCTGTACACCCAGGCGAAGATGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAGAGAGGTCATCATTGATCTCTCTGTACACCCAGGCGAAGATGTT  900

seq1  GGGGCTCACGTTGTGGTCAGCTGTGCAGTAGGCAA-TTCGAGCCACCTGG  949
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GGGGCTCACGTTGTGGTCAGCTGTGCAGTAGGCAATTTCGAGCCACCTGG  950

seq1  AAGGTA-TCCATG-TGCACTGTTGCCTCACCCTTGTGGTCAAGGTGATGA  997
      |||||| |||||| ||||||||||||||||||||||||||||||||||||
seq2  AAGGTATTCCATGTTGCACTGTTGCCTCACCCTTGTGGTCAAGGTGATGA  1000

seq1  AGCCACACTTGGAATGGCCGGATCTCTAGGAGGGCGTTGGCCGGGAAAAC  1047
      |||||||||||||||||||||||||||||||||||||||| | |||||||
seq2  AGCCACACTTGGAATGGCCGGATCTCTAGGAGGGCGTTGGGCCGGAAAAC  1050

seq1  AT--CTTCTCGAGCCAGT-GTGTGTTTCTTCCAG-AGCTCAATGACTGGC  1093
      ||   || ||||||  || ||||||||||||||| ||||| |||||| ||
seq2  ATTCTTTTTCGAGCAGGTGGTGTGTTTCTTCCAGAAGCTC-ATGACT-GC  1098

seq1  TTCTC-GGTGCAACCAGACAAAAACTGC  1120
      ||||| ||||| || |||||||||||||
seq2  TTCTCGGGTGC-ACAAGACAAAAACTGC  1125