BAC Information

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BAC

Clone NameB6Ng01-349P15
Chromosome1 (Build37)
Map Location 23,174,379 - 23,175,472
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040338, Rims1, Rims1, EG665725, LOC665731, 4933415F23Rik, Rn4.5s-ps4
Downstream geneEG623356, Ogfrl1, LOC665782, B3gat2, Smap1, 1110058L19Rik, 4921533L14Rik, LOC665808
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-349P15.bB6Ng01-349P15.g
ACCGA130796GA130797
length1,0841,186
definitionB6Ng01-349P15.b B6Ng01-349P15.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttcagagttcagctatctgtgtaatcctgtgattctgggatcct
gggatcctgagatcctgggtatgtcagagctcctgggaatcaagctacct
ctgtgaccctgagatcctggtatgaccaagctcctggaaccctgtgatac
tgtgatcctgggagtattagagcacctgggagtggagtttcttctgggtg
ttgtgggactggctgtggagttagcacccaaggtctgctcaaggcactag
cccagattggaagaaacctatgccactggtcaggcagagtttctgggggc
ctgggttccgctggtcccagttacttccggtgttggggcagatgttgtgt
ccttctcgcctctgatcctatgatcctgggcacctggaagtggagcttcc
tctggctgttgtggaactagctgcagagtttgtgcccaaggtgtgctcag
ggtactggcccagacaagaaggctcggttttatttttaaaaaatcatttt
ttccttcctttttttttttctttttctttccttccttttttttctgacta
aaagctcaggctggccctgaactactgatcctcctgattcagatgtgtga
cacaacactcaacctgatcactgttagaaaccttaggtatttgtcctttt
tttttttttaattgctttttttatggtatcattttgggtccaaacttgag
ttggtgatgctgccactaataactcactaatgcagaggaatccttggaac
tctagctgaatcctgggtcacaactgttacccaggagtccttatgacagg
ttcagagttgtgagaagcctgtcaaatctaagccacatcatggctgcctt
ggggatttaattgcagtctgtcttcaagaaaagaggagaaaaaacctcct
tatttctacccataagatttcttcatattaccttgaacaatgcaatcaac
ttgctgtgcatattttatgagtccttatttcccttataaattatcacatc
ataggaaagaagaaatttctatattttattgagttgttctgtttgatgaa
tttatatcacgatatagatgtaatatttaagatt
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atgtatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaaagtatggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcttccaaatgctgacaccattgcatacactagcaagattttactgaaa
ggacccagatgtagctgtctcttgtgagactatgcccggggcctagcaaa
cacagaagtggatgctcacagtcagctaatggatggatcacagggcctcc
caatggaggagctagagaaagtacccaggagctaaggatcttcaacccta
tagtggtacacattatgactaccagtaccctggagctctgactctagctg
catatgtatcaaaggatgctagttcggccattcacttgaaaaggaaagtc
cattgtacattccgaccttggtgcccagttacagggaacgccagggtcca
aggtgtgggatggtggttgatcatgtggcctacttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_23174379_23175472
seq2: B6Ng01-349P15.b_50_1133

seq1  GAATTCTTCAGAGTTCAGCTATCTGTGTAATCCTGTGATTCTGGGATCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAGAGTTCAGCTATCTGTGTAATCCTGTGATTCTGGGATCCT  50

seq1  GGGATCCTGAGATCCTGGGTATGTCAGAGCTCCTGGGAATCAAGCTACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCCTGAGATCCTGGGTATGTCAGAGCTCCTGGGAATCAAGCTACCT  100

seq1  CTGTGACCCTGAGATCCTGGTATGACCAAGCTCCTGGAACCCTGTGATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGACCCTGAGATCCTGGTATGACCAAGCTCCTGGAACCCTGTGATAC  150

seq1  TGTGATCCTGGGAGTATTAGAGCACCTGGGAGTGGAGTTTCTTCTGGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATCCTGGGAGTATTAGAGCACCTGGGAGTGGAGTTTCTTCTGGGTG  200

seq1  TTGTGGGACTGGCTGTGGAGTTAGCACCCAAGGTCTGCTCAAGGCACTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGGACTGGCTGTGGAGTTAGCACCCAAGGTCTGCTCAAGGCACTAG  250

seq1  CCCAGATTGGAAGAAACCTATGCCACTGGTCAGGCAGAGTTTCTGGGGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGATTGGAAGAAACCTATGCCACTGGTCAGGCAGAGTTTCTGGGGGC  300

seq1  CTGGGTTCCGCTGGTCCCAGTTACTTCCGGTGTTGGGGCAGATGTTGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTTCCGCTGGTCCCAGTTACTTCCGGTGTTGGGGCAGATGTTGTGT  350

seq1  CCTTCTCGCCTCTGATCCTATGATCCTGGGCACCTGGAAGTGGAGCTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTCGCCTCTGATCCTATGATCCTGGGCACCTGGAAGTGGAGCTTCC  400

seq1  TCTGGCTGTTGTGGAACTAGCTGCAGAGTTTGTGCCCAAGGTGTGCTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTGTTGTGGAACTAGCTGCAGAGTTTGTGCCCAAGGTGTGCTCAG  450

seq1  GGTACTGGCCCAGACAAGAAGGCTCGGTTTTATTTTTAAAAAATCATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTGGCCCAGACAAGAAGGCTCGGTTTTATTTTTAAAAAATCATTTT  500

seq1  TTCCTTCCTTTTTTTTTTTCTTTTTCTTTCCTTCCTTTTTTTTCTGACTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCCTTTTTTTTTTTCTTTTTCTTTCCTTCCTTTTTTTTCTGACTA  550

seq1  AAAGCTCAGGCTGGCCCTGAACTACTGATCCTCCTGATTCAGATGTGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTCAGGCTGGCCCTGAACTACTGATCCTCCTGATTCAGATGTGTGA  600

seq1  CACAACACTCAACCTGATCACTGTTAGAAACCTTAGGTATTTGTCCTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACACTCAACCTGATCACTGTTAGAAACCTTAGGTATTTGTCCTTTT  650

seq1  TTTTTTTTTAATTGCTTTTTTTATGGTATCATTTTGGGTCCAAACTTGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTAATTGCTTTTTTTATGGTATCATTTTGGGTCCAAACTTGAG  700

seq1  TTGGTGATGCTGCCACTAATAACTCACTAATGCAGAGGAATCCTTGGAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGATGCTGCCACTAATAACTCACTAATGCAGAGGAATCCTTGGAAC  750

seq1  TCTAGCTGAATCCTGGGTCACAACTGTTACCCAGGAGTCCTTATGACAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCTGAATCCTGGGTCACAACTGTTACCCAGGAGTCCTTATGACAGG  800

seq1  TTCAGAGTTGTGAGAAGCCTGTCAAATCTAAGCCACATCATGGCTGCCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGTTGTGAGAAGCCTGTCAAATCTAAGCCACATCATGGCTGCCTT  850

seq1  GGGGATTTAATTGCAGTCTGTCTTCAAGAAAAGAGGAGAAAAAACCTCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATTTAATTGCAGTCTGTCTTCAAGAAAAGAGGAGAAAAAACCTCCT  900

seq1  TATTTCTACCCATAAGATTTCTTCATATTACCTTGAAC-ATGCAATCAAC  949
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TATTTCTACCCATAAGATTTCTTCATATTACCTTGAACAATGCAATCAAC  950

seq1  TTGCTGTGCATA-TTTATGAGTCCTTATTTCCC-TATAAAATATCACATC  997
      |||||||||||| |||||||||||||||||||| |||||| |||||||||
seq2  TTGCTGTGCATATTTTATGAGTCCTTATTTCCCTTATAAATTATCACATC  1000

seq1  ATAGGAAAGAAGAAATTTCTAATTATTTTATTTGAAGTG-TCTGTTTGAA  1046
      |||||||||||||||||||||  ||||||| ||||  || |||||||| |
seq2  ATAGGAAAGAAGAAATTTCTA--TATTTTA-TTGAGTTGTTCTGTTTG-A  1046

seq1  TGGAAAATTTTATATCACCGATAATAAGAATGTAATTATTTTAAGATT  1094
      ||    | ||||||||| |||| |||   |||||||   |||||||||
seq2  TG----AATTTATATCA-CGAT-ATA--GATGTAAT--ATTTAAGATT  1084