BAC Information

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BAC

Clone NameB6Ng01-350A17
Chromosome1 (Build37)
Map Location 190,732,378 - 190,763,631
singlet/doubletdoublet
Overlap geneUsh2a
Upstream geneEsrrg, 9330162B11Rik
Downstream geneKctd3, Kcnk2, LOC100042424, LOC100039307, Cenpf, Ptpn14, LOC100042438, Smyd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-350A17.bB6Ng01-350A17.g
ACCGA130846GA130847
length8731,159
definitionB6Ng01-350A17.b B6Ng01-350A17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(190,732,378 - 190,733,237)(190,762,473 - 190,763,631)
sequence
gaattcaaataaatggcccaaatccggatggaaattgtaaagttgagaaa
gttgggggcattggaaatgtgtgtagagagaggagatttttgattatcgg
ccagatctgaggcttgaggaaggagaggcagtgtctcctcacactggctt
ctggcctctggtctcaagatgttagctaattttgaagggaaagttggaag
aagaacaggtttgaggggtgagtagaggtcagaggtcaaagtccagacct
ccacaagaggctgtcgctgagatgtatacctgaagtttgttagcaggcag
ccatgtttcaaacagtggtggcagacagaatctttgtgaagagaatgtag
ttggtggtgatgaggagatcctggggtcacacactaggatacaaggaatt
tggtgatcataaagaggaagagtagccagagaagaatgggatgagaaagg
acgttgagggaaagatgggtgagtaaggtaccccagaagtgagggggaaa
gatgctggttgttgctgagatgagaagagacaggagaacagaaatgtgga
cctggaccgggggagagcaaggctactagccttggaagacactgtgctag
agaatgctctcatggggtggcttgtggcaaagatggtgaccaggaaagat
ggagactcattgaagaaactcaggtggggaaggacagcagagatatggga
cagcagccgagagattgaggacctgagagctttatataaaattcaatgag
atgctgggagtacggctttacacactgatgggagctaggctgagagggag
gggcccctgggtgattggaggaaggtaatgtgggtttcattccaagaatt
gatgttcataggaaagcaggggg

gaattcccggctgagtggccctgagacacgtgcttcaggggcttttaaat
atggctaccgtatttttccatatggcttggtttttcgtccaagaactatg
attcccaacattccaggaagtaacctggtccttggctggtagggcttcca
ggttaacttcctgtcttagagtttctgcaagcatctgttgcagtggaagg
aagctgactaacatggatgggaaaagatgcaaagattatggacaggaaat
tcggaactgtattggtttttattttggcttttggtcctaggagataaatg
tagggcctaatatgtgctaggcaggcatcccaccacagaattgcattttc
cagctccccggccttttagttttagtggatcaatataaaacccagaaaac
caagtatgttctgaacagatatggctttacctactatgaattccataatg
aagagtggagattaaaaaaaaaaaaactgtgtatacccagggtatcccct
aaacataccggttcttcctcaataaacaaatcaatggtgttacagtttcc
atggaaagactcattagttacatttgataacactataatgtgtacatgta
gtgaacttaaccccacacattacagtttagaactttccaatagggaaccg
ttaaaaatatgagcaagtcagagtggaccaagttgggttgtttttaacgt
ttctgttgtaacaatgggaaatgttacagtgcaagatgtaaaaggttttt
taggaatataaaataactgaaatatttagccgtagactctgcacttcaca
gtgatcagcgcacgggtgatgtcggcttgctttgctatctagatacatgt
tttcagtgcaatgtgtatttaatctcactcccggcggccaccatcctttt
gccttgttgtccattaaaaatatgaagctcctctctaatttactcatttc
cctcaagactaattagttactgtatttttgcctttaataattttatttta
catgaagtgtgaacaccttgccacttaagctgcatccctgcacagctgtg
aatatagcagagtttctgaaaacagaagtgcctttcagaggagtagtcag
aagctgcttgagtccaggcttccatggtcacttcggtccttggcaccagg
tacacttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_190732378_190733237
seq2: B6Ng01-350A17.b_46_918

seq1  GAATTCAAATAAATGGCCCAAATCCGGATGGAAATTGTAAAGTTGAGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATAAATGGCCCAAATCCGGATGGAAATTGTAAAGTTGAGAAA  50

seq1  GTTGGGGGCATTGGAAATGTGTGTAGAGAGAGGAGATTTTTGATTATCGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGGGCATTGGAAATGTGTGTAGAGAGAGGAGATTTTTGATTATCGG  100

seq1  CCAGATCTGAGGCTTGAGGAAGGAGAGGCAGTGTCTCCTCACACTGGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATCTGAGGCTTGAGGAAGGAGAGGCAGTGTCTCCTCACACTGGCTT  150

seq1  CTGGCCTCTGGTCTCAAGATGTTAGCTAATTTTGAAGGGAAAGTTGGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCTCTGGTCTCAAGATGTTAGCTAATTTTGAAGGGAAAGTTGGAAG  200

seq1  AAGAACAGGTTTGAGGGGTGAGTAGAGGTCAGAGGTCAAAGTCCAGACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACAGGTTTGAGGGGTGAGTAGAGGTCAGAGGTCAAAGTCCAGACCT  250

seq1  CCACAAGAGGCTGTCGCTGAGATGTATACCTGAAGTTTGTTAGCAGGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAGAGGCTGTCGCTGAGATGTATACCTGAAGTTTGTTAGCAGGCAG  300

seq1  CCATGTTTCAAACAGTGGTGGCAGACAGAATCTTTGTGAAGAGAATGTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTTTCAAACAGTGGTGGCAGACAGAATCTTTGTGAAGAGAATGTAG  350

seq1  TTGGTGGTGATGAGGAGATCCTGGGGTCACACACTAGGATACAAGGAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGGTGATGAGGAGATCCTGGGGTCACACACTAGGATACAAGGAATT  400

seq1  TGGTGATCATAAAGAGGAAGAGTAGCCAGAGAAGAATGGGATGAGAAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGATCATAAAGAGGAAGAGTAGCCAGAGAAGAATGGGATGAGAAAGG  450

seq1  ACGTTGAGGGAAAGATGGGTGAGTAAGGTACCCCAGAAGTGAGGGGGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTGAGGGAAAGATGGGTGAGTAAGGTACCCCAGAAGTGAGGGGGAAA  500

seq1  GATGCTGGTTGTTGCTGAGATGAGAAGAGACAGGAGAACAGAAATGTGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTGGTTGTTGCTGAGATGAGAAGAGACAGGAGAACAGAAATGTGGA  550

seq1  CCTGGACCGGGGGAGAGCAAGGCTACTAGCCTTGGAAGACACTGTGCTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGACCGGGGGAGAGCAAGGCTACTAGCCTTGGAAGACACTGTGCTAG  600

seq1  AGAATGCTCTCATGGGGTGGCTTGTGGCAAAGATGGTGACCAGGAAAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGCTCTCATGGGGTGGCTTGTGGCAAAGATGGTGACCAGGAAAGAT  650

seq1  GGAGACTCATTGAAGAAACTCAGGT-GGGAAGGACAGCAGAGATATGGGA  699
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GGAGACTCATTGAAGAAACTCAGGTGGGGAAGGACAGCAGAGATATGGGA  700

seq1  CAGCAGCCGAGAGATTGAGGACCTGAGAGCTTTATATAAAATTCAATGAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGCCGAGAGATTGAGGACCTGAGAGCTTTATATAAAATTCAATGAG  750

seq1  ATGCT-GGAGTACG--CTTACACACTGAT-GGAGCTAGGCTGAGAGGGAG  795
      ||||| ||||||||   |||||||||||| ||||||||||||||||||||
seq2  ATGCTGGGAGTACGGCTTTACACACTGATGGGAGCTAGGCTGAGAGGGAG  800

seq1  GGGCCC--TGGTGA-TGGAGG-AGGTAATGTGGG--TCA-TCCAAG-AGT  837
      ||||||   ||||| |||||| ||||||||||||  ||| |||||| | |
seq2  GGGCCCCTGGGTGATTGGAGGAAGGTAATGTGGGTTTCATTCCAAGAATT  850

seq1  GATGTTCATAGGAAAGGAGGGGG  860
      |||||||||||||||| ||||||
seq2  GATGTTCATAGGAAAGCAGGGGG  873


seq1: chr1_190762473_190763631
seq2: B6Ng01-350A17.g_68_1226 (reverse)

seq1  AGAAGTG---CTGGTGCCAGGGCCCGAAGTGA-CAAGGAAGACCCTGGAC  46
      |||||||   ||||||||| || ||||||||| || |||||  |||||||
seq2  AGAAGTGTACCTGGTGCCAAGGACCGAAGTGACCATGGAAG--CCTGGAC  48

seq1  CTCAGCAGCTCCTGGCTTACTCCTCTGAAAGGCAACTTCTGTTTTCAGAA  96
         ||||||| ||| | |||||||||||||||| ||||||||||||||||
seq2  TCAAGCAGCTTCTGAC-TACTCCTCTGAAAGGC-ACTTCTGTTTTCAGAA  96

seq1  ACTCCTTGCTATATTCACAGCTGTGCAGGGATGGCAGCTT-AGTGGC-AG  144
      ||||  |||||||||||||||||||||||||| ||||||| |||||| ||
seq2  ACTC--TGCTATATTCACAGCTGTGCAGGGAT-GCAGCTTAAGTGGCAAG  143

seq1  GTGTTCACACTTCATGT-AAATAAAATTATTTAAGGC-AAAATACAGTAA  192
      ||||||||||||||||| ||||||||||||| ||||| ||||||||||||
seq2  GTGTTCACACTTCATGTAAAATAAAATTATTAAAGGCAAAAATACAGTAA  193

seq1  CTAATTAGTCTTTGAGGGAAATGAGTAAATTAGAGAGGAGCTTCATATTT  242
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CTAATTAGTC-TTGAGGGAAATGAGTAAATTAGAGAGGAGCTTCATATTT  242

seq1  TTAATGGACAACAAGGCAAAAGGATGGTGGCCGCCGGGAGTGAGATTAAA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGGACAACAAGGCAAAAGGATGGTGGCCGCCGGGAGTGAGATTAAA  292

seq1  TACACATTGCACTGAAAACATGTATCTAGATAGCAAAGCAAGCCGACATC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATTGCACTGAAAACATGTATCTAGATAGCAAAGCAAGCCGACATC  342

seq1  ACCCGTGCGCTGATCACTGTGAAGTGCAGAGTCTACGGCTAAATATTTCA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGTGCGCTGATCACTGTGAAGTGCAGAGTCTACGGCTAAATATTTCA  392

seq1  GTTATTTTATATTCCTAAAAAACCTTTTACATCTTGCACTGTAACATTTC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTTATATTCCTAAAAAACCTTTTACATCTTGCACTGTAACATTTC  442

seq1  CCATTGTTACAACAGAAACGTTAAAAACAACCCAACTTGGTCCACTCTGA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGTTACAACAGAAACGTTAAAAACAACCCAACTTGGTCCACTCTGA  492

seq1  CTTGCTCATATTTTTAACGGTTCCCTATTGGAAAGTTCTAAACTGTAATG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTCATATTTTTAACGGTTCCCTATTGGAAAGTTCTAAACTGTAATG  542

seq1  TGTGGGGTTAAGTTCACTACATGTACACATTATAGTGTTATCAAATGTAA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGGTTAAGTTCACTACATGTACACATTATAGTGTTATCAAATGTAA  592

seq1  CTAATGAGTCTTTCCATGGAAACTGTAACACCATTGATTTGTTTATTGAG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGAGTCTTTCCATGGAAACTGTAACACCATTGATTTGTTTATTGAG  642

seq1  GAAGAACCGGTATGTTTAGGGGATACCCTGGGTATACACAGTTTTTTTTT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAACCGGTATGTTTAGGGGATACCCTGGGTATACACAGTTTTTTTTT  692

seq1  TTTTAATCTCCACTCTTCATTATGGAATTCATAGTAGGTAAAGCCATATC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATCTCCACTCTTCATTATGGAATTCATAGTAGGTAAAGCCATATC  742

seq1  TGTTCAGAACATACTTGGTTTTCTGGGTTTTATATTGATCCACTAAAACT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAGAACATACTTGGTTTTCTGGGTTTTATATTGATCCACTAAAACT  792

seq1  AAAAGGCCGGGGAGCTGGAAAATGCAATTCTGTGGTGGGATGCCTGCCTA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGCCGGGGAGCTGGAAAATGCAATTCTGTGGTGGGATGCCTGCCTA  842

seq1  GCACATATTAGGCCCTACATTTATCTCCTAGGACCAAAAGCCAAAATAAA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATATTAGGCCCTACATTTATCTCCTAGGACCAAAAGCCAAAATAAA  892

seq1  AACCAATACAGTTCCGAATTTCCTGTCCATAATCTTTGCATCTTTTCCCA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAATACAGTTCCGAATTTCCTGTCCATAATCTTTGCATCTTTTCCCA  942

seq1  TCCATGTTAGTCAGCTTCCTTCCACTGCAACAGATGCTTGCAGAAACTCT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGTTAGTCAGCTTCCTTCCACTGCAACAGATGCTTGCAGAAACTCT  992

seq1  AAGACAGGAAGTTAACCTGGAAGCCCTACCAGCCAAGGACCAGGTTACTT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGGAAGTTAACCTGGAAGCCCTACCAGCCAAGGACCAGGTTACTT  1042

seq1  CCTGGAATGTTGGGAATCATAGTTCTTGGACGAAAAACCAAGCCATATGG  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAATGTTGGGAATCATAGTTCTTGGACGAAAAACCAAGCCATATGG  1092

seq1  AAAAATACGGTAGCCATATTTAAAAGCCCCTGAAGCACGTGTCTCAGGGC  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATACGGTAGCCATATTTAAAAGCCCCTGAAGCACGTGTCTCAGGGC  1142

seq1  CACTCAGCCGGGAATTC  1159
      |||||||||||||||||
seq2  CACTCAGCCGGGAATTC  1159


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