BAC Information

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BAC

Clone NameB6Ng01-350C08
Chromosome1 (Build37)
Map Location 62,143,625 - 62,274,941
singlet/doubletdoublet
Overlap genePard3b
Upstream geneLOC100042566
Downstream geneLOC667592, Nrp2, LOC100043070, A430093A21Rik, Ndufs1, Eef1b2, Gpr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-350C08.bB6Ng01-350C08.g
ACCGA130908GA130909
length917289
definitionB6Ng01-350C08.b B6Ng01-350C08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,273,882 - 62,274,941)(62,143,625 - 62,143,913)
sequence
gaattctctcttcttggctgtcttcaaactggttcatggctttattttgt
ctttgcacttgaactgaaatagtagctcttttgcattttcaggcctggtg
gctatggatgcaaattttaccattagatttactagttctagtcattagat
ttagactagaactctgcacatttctgctgggtctcaacttgttgattaac
acagaagatcttgtggtttgtcaggcttcacaataatgttaggcaattcc
ttattatctatctttctctatatatgtatgtatatatatatatatatata
tatatatatatatatatatatatacacacatataaatggatctatctatc
tatctatctatctatctatctatctatctatctatctatctatctatcta
tctatctatctaaaaatattattgtctgttctggttctatagaaaactct
accaaacacagctaacaagagattgctacaactctactccaggaaatatc
ctggaatggaggggttggaagcagagctgacatgctcctaggaatgaggg
tggaaacaagaaacctggccaccagataggtgtcggaagtaacaaaacag
aataagcaaaggtagccaacactgttccctggtcctctaccactatcaat
ggtagtggcagacagacagacagagacttcttacagacacaaaacggaat
tctatcctataaatagtatctgtagtctcttagtccatctccatgctggt
ggtaacatagatgtaatctgctaacttgctagttcagattaacttacaga
acacagtctatatccttagcagctgacttcatctccttcatcttagccat
gcagattgaatgctctgacttgagtgcagcatggacttactatctagctg
atatgatgaacatctgt
aaatgaagacgctgcatcctcaattcagcaaggaccaaagggacaggtag
aaagattggagtctgttattgatgaaaaggattcctttgttcatataaac
tggggcattgattgagtaataattccaaatcatcgatcttcatatatact
ttgacttcattactatcctaagtaacttcagtgttttctacctagtccta
gagcaactttgcagagtagttagaatttaactttgttttatttttgtttt
tgtttttattgataaggaagtgaggtgtgggggggtgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_62273882_62274941
seq2: B6Ng01-350C08.b_44_960 (reverse)

seq1  ACAGATGTTCACCAAGTAAACATTATTCCCTTGTTATAAAAGCAATTGAA  50
                                                        
seq2  --------------------------------------------------  0

seq1  ACCTAGGTAACAGTGAAGGCTTCATAGAGGACATGGAATTTCCAGTGAGC  100
                                                        
seq2  --------------------------------------------------  0

seq1  TTTGGAAACAGGGTAAGACTCTTACAGATAAGACAGATGTTTCAATCATT  150
                                      |||||||||   |||| |
seq2  --------------------------------ACAGATGTT--CATCA-T  15

seq1  ATCAGCTAAGATAGGTAAGTCCATGGCTGCACTCAGGTCAGAGCATTCAA  200
      ||||||| ||||| |||||||||| |||||||||| ||||||||||||||
seq2  ATCAGCT-AGATA-GTAAGTCCAT-GCTGCACTCAAGTCAGAGCATTCAA  62

seq1  TCTTGCATGGCTAAGATGAAGGAGATGAAGTCAGCTGCTAAGGATATAGA  250
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TC-TGCATGGCTAAGATGAAGGAGATGAAGTCAGCTGCTAAGGATATAGA  111

seq1  CTTGTGTTCTGTAAAGTTAATCTGAACTAGCAAGTTAGCAGATTACATCT  300
      | |||||||||| |||||||||||||||||||||||||||||||||||||
seq2  C-TGTGTTCTGT-AAGTTAATCTGAACTAGCAAGTTAGCAGATTACATCT  159

seq1  ATGTTTACCACCAGCATGGAGATGGACTAAGAGACTACAGATACTATTTA  350
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATG-TTACCACCAGCATGGAGATGGACTAAGAGACTACAGATACTATTTA  208

seq1  TAGGATAGAATTTCCGTTTTGTGTCTGTAAGAAGTCTCTGTCTGTCTGTC  400
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TAGGATAGAA-TTCCGTTTTGTGTCTGTAAGAAGTCTCTGTCTGTCTGTC  257

seq1  TGCCACTACCATTGATAGTGGTAGAGGACCAGGGAACAGTGTTGGCTACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACTACCATTGATAGTGGTAGAGGACCAGGGAACAGTGTTGGCTACC  307

seq1  TTTGCTTATTCTGTTTTGTTACTTCCGACACCTATCTGGTGGCCAGGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTATTCTGTTTTGTTACTTCCGACACCTATCTGGTGGCCAGGTTT  357

seq1  CTTGTTTCCACCCTCATTCCTAGGAGCATGTCAGCTCTGCTTCCAACCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTTCCACCCTCATTCCTAGGAGCATGTCAGCTCTGCTTCCAACCCC  407

seq1  TCCATTCCAGGATATTTCCTGGAGTAGAGTTGTAGCAATCTCTTGTTAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTCCAGGATATTTCCTGGAGTAGAGTTGTAGCAATCTCTTGTTAGC  457

seq1  TGTGTTTGGTAGAGTTTTCTATAGAACCAGAACAGACAATAATATTTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTGGTAGAGTTTTCTATAGAACCAGAACAGACAATAATATTTTTA  507

seq1  GATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGA  557

seq1  TAGATAGATAGATAGATAGAACCATTTATATGTGTGTATATATATATATA  750
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TAGATAGATAGATAGATAGATCCATTTATATGTGTGTATATATATATATA  607

seq1  TATATATATATATATATATATATATATATACATACATATATAGAGAAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATATATATATATATATACATACATATATAGAGAAAGA  657

seq1  TAGATAATAAGGAATTGCCTAACATTATTGTGAAGCCTGACAAACCACAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAATAAGGAATTGCCTAACATTATTGTGAAGCCTGACAAACCACAA  707

seq1  GATCTTCTGTGTTAATCAACAAGTTGAGACCCAGCAGAAATGTGCAGAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTCTGTGTTAATCAACAAGTTGAGACCCAGCAGAAATGTGCAGAGT  757

seq1  TCTAGTCTAAATCTAATGACTAGAACTAGTAAATCTAATGGTAAAATTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTCTAAATCTAATGACTAGAACTAGTAAATCTAATGGTAAAATTTG  807

seq1  CATCCATAGCCACCAGGCCTGAAAATGCAAAAGAGCTACTATTTCAGTTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCATAGCCACCAGGCCTGAAAATGCAAAAGAGCTACTATTTCAGTTC  857

seq1  AAGTGCAAAGACAAAATAAAGCCATGAACCAGTTTGAAGACAGCCAAGAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCAAAGACAAAATAAAGCCATGAACCAGTTTGAAGACAGCCAAGAA  907

seq1  GAGAGAATTC  1060
      ||||||||||
seq2  GAGAGAATTC  917

seq1: chr1_62143625_62143913
seq2: B6Ng01-350C08.g_75_363

seq1  AAATGAAGACGCTGCATCCTCAATTCAGCAAGGACCAAAGGGACAGGTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAGACGCTGCATCCTCAATTCAGCAAGGACCAAAGGGACAGGTAG  50

seq1  AAAGATTGGAGTCTGTTATTGATGAAAAGGATTCCTTTGTTCATATAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTGGAGTCTGTTATTGATGAAAAGGATTCCTTTGTTCATATAAAC  100

seq1  TGGGGCATTGATTGAGTAATAATTCCAAATCATCGATCTTCATATATACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCATTGATTGAGTAATAATTCCAAATCATCGATCTTCATATATACT  150

seq1  TTGACTTCATTACTATCCTAAGTAACTTCAGTGTTTTCTACCTAGTCCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTTCATTACTATCCTAAGTAACTTCAGTGTTTTCTACCTAGTCCTA  200

seq1  GAGCAACTTTGCAGAGTAGTTAGAATTTAACTTTGTTTTATTTTTGTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAACTTTGCAGAGTAGTTAGAATTTAACTTTGTTTTATTTTTGTTTT  250

seq1  TGTTTTTATTGATAAGGAAGTGAGGTGTGGGGGGGTGAA  289
      |||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTATTGATAAGGAAGTGAGGTGTGGGGGGGTGAA  289