BAC Information

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BAC

Clone NameB6Ng01-350G09
Chromosome1 (Build37)
Map Location 180,283,106 - 180,284,223
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp238, EG631449, LOC100040770, 1700016C15Rik, Adss, EG631584, EG545391, LOC666262, 5830417C01Rik, LOC666284, 4930527J03Rik, LOC666295, B230369F24Rik, LOC669454, 2310005N03Rik, Hnrpu
Downstream geneEfcab2, D230039L06Rik, Kif26b, Smyd3, LOC666354
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-350G09.bB6Ng01-350G09.g
ACCGA131080GA131081
length1,1901,099
definitionB6Ng01-350G09.b B6Ng01-350G09.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcccatttgagaatctccaagaattctactagctgtttttaatagc
ctatccacaaagtcctggaaaagctcatcaggacactgtcgaatactggc
tacacttccactgagatcccctttagtaggtaagcacagctgacagccat
agcaacctgcgagtacactcccaacaggaaacccaatctgattagcattg
ctttcatattgaccttctcctaaaagcatgttaatatcccagtctgggtt
tcctgtctgagcattcaaagcagcagttttcttactggcttcttgccatt
cagaactccaaagtaagaaatctcctcctgacaaagtagccttacataga
gtcttccaatcttggggggttaaatttgactccatgacagtatccaataa
tgcttgtgtaaaaggagctatagggccatattgtgcaacagctgttttta
actcctttatcaccttgaactacaaagtctggtattgtctgactattgtt
ttgctggtcaattatctcaactacaggaaaggttagcatcagatgtgtcc
tgccctttccccgagagcctgactcacagctctttctagcggggattggt
acatttcagaatagctgttcttccctgtatttgatatcttttttagctcc
cgaagctcattagtcaatttctgtaacttaatttcaaactctaatttact
tagtgcatgtccatttatgtagcaactcctatagtggaggccataggtgg
agcagaaggttcacaaggaggcaatcctcatcaaaatatttggcagctcc
tttttctgaatgatcttctttgtctaacatgctcatcattagagtctcta
tatctttctaatttagggttgagagggcccttttctgagaaagtcctctc
tggcaggcattcttcctgagattcttcaagctctgcctgggtactatctg
acgcctgcaggtctcttcatcatatcatcttttacagtgcccagagcaga
ggtgaaatatctgcctggtgtttctcagagcttctctattctctccaaat
ttctatctaagtttcttcttctctgacatgggcagcaaaatctatctgat
ctgaattctacataatcctccactactccctcgcttgagcgcttgagagc
tgtgacaatacctcttgaattttcaatttcccaatttttt
gaattcccaccatttagctttatcttttctatgcagccagaaggaaaatg
cccttgccccaagaatccagaagctgatttctggagcaagtgactgaata
ggtcaagactcaggcatacgtgctggggaggtgacttcccatgcaagcat
gacaacctggggtcagatcctgagaactcatgtaaacagctaggagaggt
gctcctgctagtgctcccaggggcagtgaggcaaagatagaaggatccct
ggaacttgctgggcagtcattctaacaggtttgttaagttctgggttcag
ggagggctagagagatgtctcagcagttaaaaacagtggctgctcaccta
gaaactgtgggtttgagtctcagcagccacacagcggctcatgaccatgt
tgaattcagttccaggggttctgatcctatagccccctctggcctactca
ggcaccaggcatgcaagtggtagataggtatacatgcatgcaaaacattc
atacacataaaatatttttaaaaaggtggaaaacaagacacctagtgttc
tacacacacacacacaaagcacttacatacactcacacacaacacttgca
tatacacacatacagagagagcacttgtacaaacacactcacacatagag
cacctgcatcacacacagagagagaaagagagagagtacttgtacaaaca
tacacacatagaacaactgcatcatatacaacacacacagcacctgtatc
tcacacacctacacacacacagtgatagtgacaatggtgagactcaggga
taggtgacattctagaaagctaacagcaacaggaagaagtgcatctcaac
ccatcaccatgctcccaaagtgctgacattaagtattcaacagtctgtcc
tgccctctgaaggaagggtgagccttccttgagggaattattcgttaaaa
tctgaatagctggctgggcacgtgccctatcaccctgacttgaagtgaca
taccagtctttctatgctctttcagctgtgctgtgagtcacttatgtcag
tgtgaattgcatgtagagctcttatgtgaaggaagctaagtcagtggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_180283106_180284223
seq2: B6Ng01-350G09.g_65_1163 (reverse)

seq1  TCCCACTGACTTAGCTTCTCCTTTCACATAAGAGGCCTCCTTACATGGCC  50
      |||||||||||||||||   | ||||||||||||  |||  ||||| || 
seq2  TCCCACTGACTTAGCTT---CCTTCACATAAGAG--CTC--TACAT-GCA  42

seq1  ATTCACACTGAACATTAGTGACTCACAGCCACAGCTGAAAGAAGCATAGG  100
      |||||||||| |||| |||||||||||| |||||||||||| ||||||| 
seq2  ATTCACACTG-ACATAAGTGACTCACAG-CACAGCTGAAAG-AGCATAGA  89

seq1  AAGACTTGGTAATGTCAACTTCAAGTCAGGGTGATAGGGCCACCGTGCCC  150
      ||||| |||| ||||| |||||||||||||||||||||||   |||| ||
seq2  AAGAC-TGGT-ATGTC-ACTTCAAGTCAGGGTGATAGGGC--ACGTG-CC  133

seq1  CAGCCAGCTATTCAGAATTTTAACGGAATAATTCCCTCAAGGAAGGCTCA  200
      ||||||||||||||| |||||||| |||||||||||||||||||||||||
seq2  CAGCCAGCTATTCAG-ATTTTAAC-GAATAATTCCCTCAAGGAAGGCTCA  181

seq1  CCCTTCCTTCAGAGGGCAGGACAGACTGTTGAATACTTAATGTCAGCACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCTTCAGAGGGCAGGACAGACTGTTGAATACTTAATGTCAGCACT  231

seq1  TTGGGAGCATGGTGATGGGTTGAGATGCACTTCTTCCTGTTGCTGTTAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAGCATGGTGATGGGTTGAGATGCACTTCTTCCTGTTGCTGTTAGC  281

seq1  TTTCTAGAATGTCACCTATCCCTGAGTCTCACCATTGTCACTATCACTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAGAATGTCACCTATCCCTGAGTCTCACCATTGTCACTATCACTGT  331

seq1  GTGTGTGTAGGTGTGTGAGATACAGGTGCTGTGTGTGTTGTATATGATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTAGGTGTGTGAGATACAGGTGCTGTGTGTGTTGTATATGATGC  381

seq1  AGTTGTTCTATGTGTGTATGTTTGTACAAGTACTCTCTCTCTTTCTCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTTCTATGTGTGTATGTTTGTACAAGTACTCTCTCTCTTTCTCTCT  431

seq1  CTGTGTGTGATGCAGGTGCTCTATGTGTGAGTGTGTTTGTACAAGTGCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGTGATGCAGGTGCTCTATGTGTGAGTGTGTTTGTACAAGTGCTC  481

seq1  TCTCTGTATGTGTGTATATGCAAGTGTTGTGTGTGAGTGTATGTAAGTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTATGTGTGTATATGCAAGTGTTGTGTGTGAGTGTATGTAAGTGC  531

seq1  TTTGTGTGTGTGTGTGTAGAACACTAGGTGTCTTGTTTTCCACCTTTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTGTGTGTGTGTAGAACACTAGGTGTCTTGTTTTCCACCTTTTTA  581

seq1  AAAATATTTTATGTGTATGAATGTTTTGCATGCATGTATACCTATCTACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTTTATGTGTATGAATGTTTTGCATGCATGTATACCTATCTACC  631

seq1  ACTTGCATGCCTGGTGCCTGAGTAGGCCAGAGGGGGCTATAGGATCAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCATGCCTGGTGCCTGAGTAGGCCAGAGGGGGCTATAGGATCAGAA  681

seq1  CCCCTGGAACTGAATTCAACATGGTCATGAGCCGCTGTGTGGCTGCTGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGGAACTGAATTCAACATGGTCATGAGCCGCTGTGTGGCTGCTGAG  731

seq1  ACTCAAACCCACAGTTTCTAGGTGAGCAGCCACTGTTTTTAACTGCTGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAACCCACAGTTTCTAGGTGAGCAGCCACTGTTTTTAACTGCTGAG  781

seq1  ACATCTCTCTAGCCCTCCCTGAACCCAGAACTTAACAAACCTGTTAGAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTCTCTAGCCCTCCCTGAACCCAGAACTTAACAAACCTGTTAGAAT  831

seq1  GACTGCCCAGCAAGTTCCAGGGATCCTTCTATCTTTGCCTCACTGCCCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCCCAGCAAGTTCCAGGGATCCTTCTATCTTTGCCTCACTGCCCCT  881

seq1  GGGAGCACTAGCAGGAGCACCTCTCCTAGCTGTTTACATGAGTTCTCAGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCACTAGCAGGAGCACCTCTCCTAGCTGTTTACATGAGTTCTCAGG  931

seq1  ATCTGACCCCAGGTTGTCATGCTTGCATGGGAAGTCACCTCCCCAGCACG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGACCCCAGGTTGTCATGCTTGCATGGGAAGTCACCTCCCCAGCACG  981

seq1  TATGCCTGAGTCTTGACCTATTCAGTCACTTGCTCCAGAAATCAGCTTCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCTGAGTCTTGACCTATTCAGTCACTTGCTCCAGAAATCAGCTTCT  1031

seq1  GGATTCTTGGGGCAAGGGCATTTTCCTTCTGGCTGCATAGAAAAGATAAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCTTGGGGCAAGGGCATTTTCCTTCTGGCTGCATAGAAAAGATAAA  1081

seq1  GCTAAATGGTGGGAATTC  1118
      ||||||||||||||||||
seq2  GCTAAATGGTGGGAATTC  1099