BAC Information

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BAC

Clone NameMSMg01-045E20
Chromosome1 (Build37)
Map Location 62,561,613 - 62,562,088
singlet/doubletsinglet
Overlap genePard3b
Upstream genenone
Downstream geneLOC667592, Nrp2, LOC100043070, A430093A21Rik, Ndufs1, Eef1b2, Gpr1, 1700039I01Rik, 4930431J08Rik, LOC667644, LOC100042638, Adam23
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-045E20.T7 (MSMg01no045_e20.b1)MSMg01-045E20.TJ (MSMg01no045_e20.g1)
ACCAG275969AG275970
length674696
length of high quality
(start - end)
497 (47 - 543)372 (50 - 421)
definitionCHROMAT_FILE: MSMg01no045_e20.b1 PHD_FILE: MSMg01no045_e20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:13 2005CHROMAT_FILE: MSMg01no045_e20.g1 PHD_FILE: MSMg01no045_e20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTACCAGTTCAACATAATCCGCGGAATTCACGACCTTCCCCTACATCAGG
CTTCATGCTGAAGCTCAAAACCCTGCAATTTGAACATCACAAAGCCAGAG
GTATAGTTACTGGATTTTCTTTGAAGTGTCTTCACATAGATACAAGTTGG
AATCCACCCATAAATATAAAGAAATGTGAAAACAGCATTGCCACAAATAA
CAGATGTTTTCCTTCCACTGCCAGCACGCTCAAGGTAAAAGTTAATTTAT
TTTTATTTATTTTTTTGGTCCAAAACCAACCAACCAAACAAACTGAAATC
CAAGAAAGACAAACAACATGGTTAGGAGCTAAGCCTTCCAACAGGTGAAA
TTGCTGTTAATGCATTCGATAAATTATTCCCTTGTCTCATGGGAAAACCA
GATGGTTCAGGTGGGAACCAACACTGTGTTTTGGAAGTCCTTGTACATTG
TATTTTTGAATATAAAAGACAACCTGAAATCTATCCATGCTTATGAAAAG
AGAAAAGAAAAATAAGGAAAAGAACCATAGGAAGATTATCAGGCACGGTG
GAGGTGCCATACAGAAAGGCGATGTTGAGCTGGAGAAGGATCTGACCGAC
AGAACATCACAACTTTTCATCCATCTCACTGCTGCTGTTTAAAGTTTCAA
AGGTTATCAAAAGCTCATGCATTC
GGCGGCCGCCTGTTTCACACATGTGGGTGACCTATAGAATGTTCAGCGGA
ATTCCATGGCAAGGAAACAAGTCAGAGACAGCCTCCTCTACAATTGTTAG
GGGACCCATATGAAGACTAAGCTACACATCTGCTACAAATGCGTAGGAAG
TAGAGTACCTGCTTTTATTTTTTAACTAGTGCTTAAAAACACAAGGAGCT
GGGGGGCGGGGGGGGGAATCTGTAACCCTATAGGTGAAACAACAATATGA
ACTAACCAGTACCCCCACACACACCCCCAGCTCGTGTCTCTAGCTGCATA
TGTATCAGAAGATGGCCTGGGCAGCCATCAGTGGAAAGAGAGGCCCATTG
GACATGCAAACTTTATATGCCCCAGTACAGGGGAAGAGCAGGGCCAAGAG
GTGGGAGTGGGTGGGTGGGGGAGTGGATGCCCTTTTTCCTTTAGCCCCCT
TTCCTACTATTCTCCTCTCATCCCCGCGTCCCTCCTCTTTCCTCTTTTCA
CCCTTTCTTTTTTTGCACCTCCCCTTTCTTTTGCCGCGCCGTCATCTTCT
CTCGCCTCTACCCCGATCCCCCCTTTCCCTCGCTATCCTCTGCTATCTAC
CGCCCCTCTACTCGTATTCATGTCCCCTCCCTTTTGTTATACCTCTTATT
CCCACCTCTCCATGAGCCATGGTCCCTTTCGCTCCTTCATTCTGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no045_e20.b1 MSMg01no045_e20.b1 CHROMAT_FILE:
MSMg01no045_e20.b1 PHD_FILE: MSMg01no045_e20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:13 2005
         (497 letters)



>mm_chr1_62561193_62562089
          Length = 897

 Score =  897 bits (464), Expect = 0.0
 Identities = 473/476 (99%)
 Strand = Plus / Minus

                                                                       
Query: 22  aaaccctgcaatttgaacatcacaaagccagaggtatagttactggattttctttgaagt 81
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 896 aaaccctgcaatttgaacatcacaaagccagaggtatagttactggattttctttgaagt 837

                                                                       
Query: 82  gtcttcacatagatacaagttggaatccacccataaatataaagaaatgtgaaaacagca 141
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836 gtcttcacatagatacaagttggaatccacccataaatataaagaaatgtgaaaacagca 777

                                                                       
Query: 142 ttgccacaaataacagatgttttccttccactgccagcacgctcaaggtaaaagttaatt 201
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 776 ttgccacaaataacagatgttttccttccactgccagcacgctcaaggtaaaggttaatt 717

                                                                       
Query: 202 tatttttatttatttttttggtccaaaaccaaccaaccaaacaaactgaaatccaagaaa 261
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 716 tatttttatttatttttttggtccaaaaccaaccaaacaaacaaactgaaatccaagaaa 657

                                                                       
Query: 262 gacaaacaacatggttaggagctaagccttccaacaggtgaaattgctgttaatgcattc 321
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 gacaaacaacatggttaggagctaagccttccaacaggtgaaattgctgttaatgcattc 597

                                                                       
Query: 322 gataaattattcccttgtctcatgggaaaaccagatggttcaggtgggaaccaacactgt 381
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 gataaattattcccttgtctcatgggaaaaccagatggttcaggtgggaaccaacactgt 537

                                                                       
Query: 382 gttttggaagtccttgtacattgtatttttgaatataaaagacaacctgaaatctatcca 441
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 536 gttttggaagtccttgtacattgtatttttgaatataaaagataacctgaaatctatcca 477

                                                                   
Query: 442 tgcttatgaaaagagaaaagaaaaataaggaaaagaaccataggaagattatcagg 497
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 tgcttatgaaaagagaaaagaaaaataaggaaaagaaccataggaagattatcagg 421


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space:   431969
Effective search space used:   431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)