BAC Information

Click to search

BAC

Clone NameMSMg01-045F07
Chromosome1 (Build37)
Map Location 158,713,285 - 158,854,369
singlet/doubletdoublet
Overlap geneLOC433368, Ralgps2, Angptl1
Upstream geneCep350, LOC676894, Tor1aip1, Ifrg15, Tor1aip2, A230106N23Rik, Tdrd5, Nphs2, 9430070O13Rik, LOC100038991, Soat1, LOC100039026, Abl2, Tor3a, C530043G21Rik
Downstream gene4930439D14Rik, 1700057K13Rik, Rasal2, Gabarapl2-ps1_1522.1, 2810025M15Rik, BC026585, Lztr2, LOC664935, LOC100039217
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-045F07.T7 (MSMg01no045_f07.b1)MSMg01-045F07.TJ (MSMg01no045_f07.g1)
ACCAG275991AG275992
length666672
length of high quality
(start - end)		549 (57 - 605)617 (56 - 672)
definitionCHROMAT_FILE: MSMg01no045_f07.b1 PHD_FILE: MSMg01no045_f07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:15 2005CHROMAT_FILE: MSMg01no045_f07.g1 PHD_FILE: MSMg01no045_f07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(158,854,025 - 158,854,369)(158,713,285 - 158,713,940)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCATGT
AACGGGGTTGTTTGACCCCCCCCCCCAGGTTGAGAACCCCTGCAAGTCTA
ACTGGGCTAAGTATAAGAAACCAGACATTTGGGGGTGACTGGCCATGTTC
ACTGTTTTCATTGTAGAGGTAGAGGTAAAATCTCAAAATCTCGCCAGGCG
TGGTGGCTCATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGA
TTTCTGAGTTGGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCC
AAGGCTACACAGAGAAACCCTGTCTTGAAAAACCAAAAACCAGAAAAATG
TAAAATCTATCTTTCTTCCTTCCCCCTCCCTCCCCTCTTCTCTCCCTTCC
CCCTCCTTTCCTCCTGCCTTCCTTCTTTCCTTCCTTCCTTCATGTGCTTT
TTTTTGAGACACAAAAGATCCTTTGTAGCCACCTAGTCTTGGATCTCAAG
CGTGGCCTTGAACTCACTGTTCAGGCCATAGCCTCAGGAGTGTTGGGATT
AAAGGATGAGCCAGCATCACTCCTGCCAATAGAGTGAGTTGTTTTTAAAA
AGTTTAAGAAATGATATGGTAAAGCTACTTTTATGGCTGTGAAATGGTAT
AAGATGGATAAAATTA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTCTGTCCATGTTATGTAAAGACACAGAGAAGATGGGCACTTACAA
GCCTTGGCTGAATAGACTCTGCTGGTATCTTGAACTTGGACTTTGCAACT
CTTAGGGCCATGAGAACTCCCTTTGTTGTTTAAGTAACCAGCCTCTGGTA
TTTTGTATTAGTGGCCTCAGCTGATTAAGACCATAGTGAAGTCACCTAGA
GGACCCTGTCACCGCAAGTGACAGGAGAATGAGGTACCTCTACAGCTGAG
CTCATCGTGTGGGCCAAGCTCAGCTGCACATTCTATTTCACACCAAGAAG
AATCGAATTTCTTTTTCCTACTTGTGGAGTCTATAGCATTTGTTCCCTGT
ATGGGCAGTTGGCAGCACCTTTAGCATTTGGGGATGAGGTAGAGAGAGAG
GGGAGTCCTCACAGTAGGACTGAGATCAACCACCTGCAGACACACTCCAC
CTCCGTAGAGGTTTGGCGATGCAGAGATGAAGATTACTGAGAGATTAAGA
GACACATTAAAGTTAAGAGCTAGAGATAAGGTGTGAGTTGTATAAACCAG
TGACCTGGTAAGAGTTAAAGTGGCTAGGCATAGAAGACCCTGTGGAGACC
TTAGAGAGGTGAAGGGAGAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no045_f07.b1 MSMg01no045_f07.b1 CHROMAT_FILE:
MSMg01no045_f07.b1 PHD_FILE: MSMg01no045_f07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:15 2005
         (549 letters)



>mm_chr1_158854025_158854973
          Length = 949

 Score =  625 bits (323), Expect = 0.0
 Identities = 341/349 (97%), Gaps = 4/349 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   gttgtttgacccccccccccaggttgagaacccctgcaagtctaactgggctaagtataa 60
           |||||||||    |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 gttgtttga----cccccccaggttgagaacccctgcaagtctaactgggctaagtataa 290

                                                                       
Query: 61  gaaaccagacatttgggggtgactggccatgttcactgttttcattgtagaggtagaggt 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 289 gaaaccagacatttgggggtgactgggcatgttcactgttttcattgtagaggtagaggt 230

                                                                       
Query: 121 aaaatctcaaaatctcgccaggcgtggtggctcatgcctttaatcccagcacttgggagg 180
           ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 229 aaaatctcaaaatctcgccaggcgtggtggcgcatgactttaatcccagcacttgggagg 170

                                                                       
Query: 181 cagaggcaggcggatttctgagttggaggccagcctggtctacaaagtgagttccaggac 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 169 cagaggcaggcggatttctgagttggaggccagcctggtctacagagtgagttccaggac 110

                                                                       
Query: 241 agccaaggctacacagagaaaccctgtcttgaaaaaccaaaaaccagaaaaatgtaaaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109 agccaaggctacacagagaaaccctgtcttgaaaaaccaaaaaccagaaaaatgtaaaat 50

                                                            
Query: 301 ctatctttcttccttccccctccctcccctcttctctcccttccccctc 349
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49  ctatctttcttccttccccctccctcccctcttctctcccttccccctc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space:   506121
Effective search space used:   506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no045_f07.g1 MSMg01no045_f07.g1 CHROMAT_FILE:
MSMg01no045_f07.g1 PHD_FILE: MSMg01no045_f07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:16 2005
         (617 letters)



>mm_chr1_158713124_158714140
          Length = 1017

 Score = 1067 bits (552), Expect = 0.0
 Identities = 611/656 (93%), Gaps = 39/656 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgtccatgttatgtaaagacacagagaagatgggcacttacaagccttggctgaatag 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 162 tctgtccatgttatgtaaagacacagagaagatgggcgcttacaagccttggctgaatag 221

                                                                       
Query: 61  actctgctggtatcttgaacttggactttgcaactcttagggccatgagaactccctttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 actctgctggtatcttgaacttggactttgcaactcttagggccatgagaactccctttg 281

                                                                       
Query: 121 ttgtttaagtaaccagcctctggtattttgtattagtggcctcagctgattaagaccata 180
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 282 ttgtttaagtaaccagcctctggtattttgtattagtggcctcaactgattaagaccata 341

                                                                       
Query: 181 gtgaagtcacctagaggaccctgtcaccgcaagtgacaggagaatgaggtacctctacag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 gtgaagtcacctagaggaccctgtcaccgcaagtgacaggagaatgaggtacctctacag 401

                                                                       
Query: 241 ctgagctcatcgtgtgggccaagctcagctgcacattctatttcacaccaagaagaatcg 300
           |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 ctgagctcattgtatgggccaagctcagctgcacattctatttcacaccaagaagaatcg 461

                                                                       
Query: 301 aatttctttttcctacttgtggagtctatagcatttgttccctgtatgggcagttggcag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 aatttctttttcctacttgtggagtctatagcatttgttccctgtatgggcagttggcag 521

                                                                       
Query: 361 cacctttagcatttggggatgaggtagagagagaggggagtcctcacagtaggactgaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 cacctttagcatttggggatgaggtagagagagaggggagtcctcacagtaggactgaga 581

                                                                       
Query: 421 tcaaccacctgcagacacactccacctccgtagaggtttggcgatgcagagatgaagat- 479
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| 
Sbjct: 582 tcaaccacctgcagacacactccacctccatagaggtttggcgatgcagagatgaagatc 641

                                                                       
Query: 480 --------------------------------------tactgagagattaagagacaca 501
                                                 ||||||||||||||||||||||
Sbjct: 642 tcattcgttactccatcaagattaggtgacaccaagtttactgagagattaagagacaca 701

                                                                       
Query: 502 ttaaagttaagagctagagataaggtgtgagttgtataaaccagtgacctggtaagagtt 561
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 ttaaagttaaaagctagagataaggtgtgagttgtataaaccagtgacctggtaagagtt 761

                                                                   
Query: 562 aaagtggctaggcatagaagaccctgtggagaccttagagaggtgaagggagaaga 617
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 aaagtggctaggcatagaagaccctgtggagaccttagagaggtgaagggagaaga 817


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space:   611249
Effective search space used:   611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |