BAC Information

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BAC

Clone NameMSMg01-045I02
Chromosome1 (Build37)
Map Location 66,725,095 - 66,873,303
singlet/doubletdoublet
Overlap geneRpe, 1110028C15Rik
Upstream geneCrygf, LOC667781, EG667786, Mtap2, C030018G13Rik
Downstream geneAcadl, Myl1, LOC100043192, Lancl1, Cps1, Kif22-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-045I02.T7 (MSMg01no045_i02.b1)MSMg01-045I02.TJ (MSMg01no045_i02.g1)
ACCAG276123AG276124
length642769
length of high quality
(start - end)		467 (40 - 506)404 (163 - 566)
definitionCHROMAT_FILE: MSMg01no045_i02.b1 PHD_FILE: MSMg01no045_i02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:28 2005CHROMAT_FILE: MSMg01no045_i02.g1 PHD_FILE: MSMg01no045_i02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,872,988 - 66,873,303)(66,725,095 - 66,725,498)
sequence
CCATATCCAGAAATCCGCGGATTCTTTACTGTTCCCTAGGATTACTTTTT
TTTTTAGAATATATATTTTGTATTATTCACTTAGATCAATGTTCATGATA
AGGTTTGAACTGTACCTTTAGAACACTTCTTTTCAGCCTGTGTCTTGAGT
GTTCCAGTGTTAACTGTTGAAAGAGCAGCTTTTATCAGGAACTGCTTTTT
TGCGCCTTGATTAGAAACCAAGAGAGACCATGTTTATCTGAGTCCGTTTC
TAGGCTCTGTTCTGTTGCACTGATCTCTGACTGTAAAGCCTTCGCTGCTA
TCCTGAGTTTAGTAGTTTTTAGAAAGTTTTAAAACTAGATGGTGGAATTT
TCCTAGCTTTGTTCTTTTTCAAAATTGCTCTGGCTCCTCTTATGCTTCGA
TTATTCCTAACTTTTTAAACTTCATGTTCATTTTTTAAAATGAATTTCTC
TGTAGCTATGCACATAGTCCTGTGGCACTTTTGGGTGGGATGAGTTAGAT
CTTCACACCAGGGTGAAGGGAGGTGTCATCTGCTGGGATCTTCCAGGACT
TGAATGACGAGTGCGTTTATTTAGATCTTTAGTCCGCTGCTTTTAGACTT
CATCACTAAAGTGTCATGTACATGTTTAGTTATGCTTGCATG

NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNCCATATATAANNCCCGATGATAXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXACTTTCTCAAGCATCTGTTATAATTCCGCAGGTGTTAT
TTCCTTTAATCCACACAAATGTCTGCAAATGTGTCATTCAAAGCCCAATT
TAAAAGGGAGGAATCTGGCATTCAGAGGTGTTAAATAGCTTCTATACAGA
AAATGTGAAGCTGGTAGGTGACTTTGATTAGTGTTCTGGATTCTAAACCC
TCTTAACGTTCCACAAGTGAGAATGGGGAGGAGCTAAGTGGGGTTCACAA
GGGGAAGGTATTTCAAACTATTTGAAAGTGCTTCCCCATCCCCCACCCCC
ACCTTGGGTCTGTATTGCTTACTCTGCAGTTCTTTCCTTGAGGAAATTAA
ATCATTGTTTACCATTAGAGGGCAGTCATCACCCATATGCAAAAGTATGA
GGGTTTTTTGGTGTTTGTTTGATTGTTGCTGTTGCTTGTTTTCTAAAGTG
TTTACTGTTGTTTACAGTATGTTCAAAACAAAAACATTAAAAATGCAATA
TTGGTGATATCCACACACTGCCATTCAAATATTCCACCAAACTCTGCCAA
GGCCTTTTGCCCCCAAAGCTTGAGGAGTGTCCCATGCTGTTTGCTGCATA
AAAAAAATCTTAAAATGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no045_i02.b1 MSMg01no045_i02.b1 CHROMAT_FILE:
MSMg01no045_i02.b1 PHD_FILE: MSMg01no045_i02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:28 2005
         (467 letters)



>mm_chr1_66872437_66873303
          Length = 867

 Score =  611 bits (316), Expect = e-179
 Identities = 316/316 (100%)
 Strand = Plus / Minus

                                                                       
Query: 152 actgcttttttgcgccttgattagaaaccaagagagaccatgtttatctgagtccgtttc 211
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867 actgcttttttgcgccttgattagaaaccaagagagaccatgtttatctgagtccgtttc 808

                                                                       
Query: 212 taggctctgttctgttgcactgatctctgactgtaaagccttcgctgctatcctgagttt 271
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 taggctctgttctgttgcactgatctctgactgtaaagccttcgctgctatcctgagttt 748

                                                                       
Query: 272 agtagtttttagaaagttttaaaactagatggtggaattttcctagctttgttctttttc 331
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 agtagtttttagaaagttttaaaactagatggtggaattttcctagctttgttctttttc 688

                                                                       
Query: 332 aaaattgctctggctcctcttatgcttcgattattcctaactttttaaacttcatgttca 391
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 aaaattgctctggctcctcttatgcttcgattattcctaactttttaaacttcatgttca 628

                                                                       
Query: 392 ttttttaaaatgaatttctctgtagctatgcacatagtcctgtggcacttttgggtggga 451
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 ttttttaaaatgaatttctctgtagctatgcacatagtcctgtggcacttttgggtggga 568

                           
Query: 452 tgagttagatcttcac 467
           ||||||||||||||||
Sbjct: 567 tgagttagatcttcac 552


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 867
Length adjustment: 10
Effective length of query: 457
Effective length of database: 857
Effective search space:   391649
Effective search space used:   391649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no045_i02.g1 MSMg01no045_i02.g1 CHROMAT_FILE:
MSMg01no045_i02.g1 PHD_FILE: MSMg01no045_i02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:28 2005
         (404 letters)



>mm_chr1_66724895_66725698
          Length = 804

 Score =  781 bits (404), Expect = 0.0
 Identities = 404/404 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   actttctcaagcatctgttataattccgcaggtgttatttcctttaatccacacaaatgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actttctcaagcatctgttataattccgcaggtgttatttcctttaatccacacaaatgt 260

                                                                       
Query: 61  ctgcaaatgtgtcattcaaagcccaatttaaaagggaggaatctggcattcagaggtgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgcaaatgtgtcattcaaagcccaatttaaaagggaggaatctggcattcagaggtgtt 320

                                                                       
Query: 121 aaatagcttctatacagaaaatgtgaagctggtaggtgactttgattagtgttctggatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaatagcttctatacagaaaatgtgaagctggtaggtgactttgattagtgttctggatt 380

                                                                       
Query: 181 ctaaaccctcttaacgttccacaagtgagaatggggaggagctaagtggggttcacaagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctaaaccctcttaacgttccacaagtgagaatggggaggagctaagtggggttcacaagg 440

                                                                       
Query: 241 ggaaggtatttcaaactatttgaaagtgcttccccatcccccacccccaccttgggtctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggaaggtatttcaaactatttgaaagtgcttccccatcccccacccccaccttgggtctg 500

                                                                       
Query: 301 tattgcttactctgcagttctttccttgaggaaattaaatcattgtttaccattagaggg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tattgcttactctgcagttctttccttgaggaaattaaatcattgtttaccattagaggg 560

                                                       
Query: 361 cagtcatcacccatatgcaaaagtatgagggttttttggtgttt 404
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagtcatcacccatatgcaaaagtatgagggttttttggtgttt 604


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 804
Length adjustment: 9
Effective length of query: 395
Effective length of database: 795
Effective search space:   314025
Effective search space used:   314025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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