CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCATTGTATCATCATATTAATATCCATTAGGACAAATACATAATCAT
AAAAACAAATCCAAATTTTTAGGAAAAAGGAACTGAAATTATTTTCCATG
ATTGTTATTGTTGTTTTGTCAAACAAAAAGGAATCTATTTTTCTGTGTTA
TTTTTGCAAAGTAAAATCTGTATATACCATACTCAGTTAAATGAAAACAA
TAAGTAGTATGAAATTGTTCAGTGGTTAAGCATGCAGGAACTGATAGAGA
TCCATGGAAGAAGATTCATTACTGCTCTGCTTTTTGTGGTTGGCCAAGCG
TACTTTCTTATAACACCAAGAACCACCAGCCCAGCAGTGGGACTATACAC
ACTTAACTGGTCCCTTGCAGATAAATTAATAATCAAGAAAATGCCACACA
AACTTTCTGTGAGGAAAATGTTTTTTCACTGACTTTGTATCCTCATTGCT
GTCACTCCTTCCAGCCCCTCTCCTATCTTACAGTACCCTTCCCTACCCCT
CCCATTCCCCTCTGAGAAAGTGGAGGACCACCCTTGCTATCCCTCTACCC
TGNTATGTCAAGTCTCTGCAGAGTTAGGCATTTCTTCTCCCCTGAATCCA
GTCAAGATGGCTAAGTTATCCAGCCTTACAGAAATGAAGGGAAAGTGC

CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTATCTCACTTTTA
ATGAGGTTATTTGCTTTTCTGGAGTCCAGCTTCTTGAGTTCTTTGCATAT
ATTGGCTACTAGTCCCCTATCGGGTATAGGATTGGTAAAGATCATTTCCC
AATCTGTTGGTGACCTTTTTGTCTTATTGGCAGTATCTTTTTGCCTTACA
GAAGCTTTGCAATTTTATGAGGTCCCATTTGTTGATTCTCGATCTTATAC
CACCAGCCATTGCTGTTCTGTTCAGGAATTTTTCTCCTGTGTCCATATTT
TCAAGGCTTTTCCCCACTTTCTTGTCTGTAAGTTTCAGCTTCTCTGTTTT
TTTTTTTTTGTGGAGTTCCTTGTTCCACATTGACTTGACCTTAGTACAAG
GAGATATGAATGGATTAATTTGCATTCTTCTACATGATAACCACATGTTG
AGCCAGCACCACTTGTTGAAAATGTTGTCTTTTTCCCACTGGATGGTTTT
AGCTCCCTTGTCAAAGATTAAGTGACAATAGGTGTGTGGGTTCATATCTG
GGTCTTCAGTTCTATTCCATTGATCTAACCATCACTATACCAGTGCCATG
CAGTTTTATTTCACAATTGCTCTGTAGTACAGCTTGAGGTCAGGCAT

Query= MSMg01no046_c10.b1 MSMg01no046_c10.b1 CHROMAT_FILE:
MSMg01no046_c10.b1 PHD_FILE: MSMg01no046_c10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:15 2005
         (558 letters)



>mm_chr1_101583024_101583982
          Length = 959

 Score =  723 bits (374), Expect = 0.0
 Identities = 419/434 (96%), Gaps = 3/434 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcattgtatcatcatattaatatccattaggac-aaatacataatcataaaaac 63
           ||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 441 gaattctcattgtataatcatattaatatccattagggcaaaatacataatcataaaaac 382

                                                                       
Query: 64  aaatccaaatttttaggaaaaaggaactgaaattattttccatgattgttattgttgttt 123
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaatccaaattttaaggaaaaaggaactgaaattattttccatgattgttattgttgttt 322

                                                                       
Query: 124 tgtcaaacaaaaaggaatctatttttctgtgttatttttgcaaagtaaaatctgtatata 183
           ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 321 tgtcaaacaaaaaggaatctatttttccgtgttatttttgcagagtaaaatctgtatata 262

                                                                       
Query: 184 ccatactcagttaaatgaaaacaataagtagtatgaaattgttcagtggttaagcatgca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccatactcagttaaatgaaaacaataagtagtatgaaattgttcagtggttaagcatgca 202

                                                                       
Query: 244 ggaactgatagagatccatggaagaagattcattactgctctgctttttgtggttggcca 303
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 ggaactgatagagatccatggaagaagattcattactggtctgctttttgtggttggcca 142

                                                                       
Query: 304 agcgtactttcttataacaccaagaa-ccaccagcccagcagtgggactatacacactta 362
           ||| ||||||||||||||||||| || |||||||||||| ||||||||||||||||||||
Sbjct: 141 agcctactttcttataacaccaaaaaaccaccagcccagaagtgggactatacacactta 82

                                                                       
Query: 363 actggtcccttgcagataaattaataatcaagaaaatgccacacaaactttctgtgagga 422
           |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 81  actggtcccttgaagataaattaataatcaagaaaatgccgcacaaactttctgtgagga 22

                         
Query: 423 aaat-gttttttca 435
           |||  |||||||||
Sbjct: 21  aaaaagttttttca 8


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 959
Length adjustment: 10
Effective length of query: 548
Effective length of database: 949
Effective search space:   520052
Effective search space used:   520052
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)