Query= MSMg01no046_f03.b1 MSMg01no046_f03.b1 CHROMAT_FILE:
MSMg01no046_f03.b1 PHD_FILE: MSMg01no046_f03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:27 2005
(584 letters)
>mm_chr1_66168604_66169587
Length = 984
Score = 1129 bits (584), Expect = 0.0
Identities = 584/584 (100%)
Strand = Plus / Minus
Query: 1 agctctagaaattgataagtactcaaatataggaaccagaagtgatgacttctgtatagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 agctctagaaattgataagtactcaaatataggaaccagaagtgatgacttctgtatagg 725
Query: 61 caagggaccaaaaatcattaattttacggtttatcaagaaagtttctacaagaaagagag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 caagggaccaaaaatcattaattttacggtttatcaagaaagtttctacaagaaagagag 665
Query: 121 gagagattactgaagaagaatctgacacagggatatagaacatgtactactctcctagag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 gagagattactgaagaagaatctgacacagggatatagaacatgtactactctcctagag 605
Query: 181 gacccaaggactgctgtaacacttatagcatgaagactattgagtaataaagtagatatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 gacccaaggactgctgtaacacttatagcatgaagactattgagtaataaagtagatatt 545
Query: 241 taggaaagtggctggctactattctggtgacctttaaaagaagttattgtcgctgctgta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 taggaaagtggctggctactattctggtgacctttaaaagaagttattgtcgctgctgta 485
Query: 301 agttcctatagagttgcttcttcatgaaaccattggcacccactgtcctcagactaggaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 agttcctatagagttgcttcttcatgaaaccattggcacccactgtcctcagactaggaa 425
Query: 361 tgcattacatcaacaagagctaacgtctcctgtgcagacagaagaaaaacaagatgttgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 tgcattacatcaacaagagctaacgtctcctgtgcagacagaagaaaaacaagatgttgg 365
Query: 421 ccttgacttgaagacacttgaagtatcagagtaaggatggaggatctaatcggaaggact 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ccttgacttgaagacacttgaagtatcagagtaaggatggaggatctaatcggaaggact 305
Query: 481 agatgcaatcgtaaatagattcaagaaagtggcattagatgacccttgaaggagacatag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 agatgcaatcgtaaatagattcaagaaagtggcattagatgacccttgaaggagacatag 245
Query: 541 aattttgataataaccaacctaagtgaaatacatccttaaagtg 584
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 aattttgataataaccaacctaagtgaaatacatccttaaagtg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space: 559076
Effective search space used: 559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no046_f03.g1 MSMg01no046_f03.g1 CHROMAT_FILE:
MSMg01no046_f03.g1 PHD_FILE: MSMg01no046_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:27 2005
(487 letters)
>mm_chr1_66001275_66002160
Length = 886
Score = 934 bits (483), Expect = 0.0
Identities = 486/487 (99%), Gaps = 1/487 (0%)
Strand = Plus / Plus
Query: 1 tcttgttcatttagtaatgtcaagtgtatggcaattgaacagatcaatatatttgttaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttgttcatttagtaatgtcaagtgtatggcaattgaacagatcaatatatttgttaag 260
Query: 61 acatgatgtcactgaaacagagcctccaattgtcgaagttcatttcaatcagctaggaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acatgatgtcactgaaacagagcctccaattgtcgaagttcatttcaatcagctaggaag 320
Query: 121 caaaatgtgtgtttcacaggaccatgtggatagcaggatgtgcctaattggttatgatat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaaatgtgtgtttcacaggaccatgtggatagcaggatgtgcctaattggttatgatat 380
Query: 181 gtgtcatcccctgtgtctcagcctaaatagactatctaataaagtcactcaagaactaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgtcatcccctgtgtctcagcctaaatagactatctaataaagtcactcaagaactaat 440
Query: 241 gtgcttttaaatagaaacccaactcatgacaactgtttctcatatgctttataaaatcct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgcttttaaatagaaacccaactcatgacaactgtttctcatatgctttataaaatcct 500
Query: 301 gatgcaaaacaagagaaataaattattaaactaaatgattcatttgtattttttcttatc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gatgcaaaacaagagaaataaattattaaactaaatgattcatttgtattttttcttatc 560
Query: 361 ttaaaacaatgtgctttttactctttgaaccctttctgttccatgaatcactgcactttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttaaaacaatgtgctttttactctttgaaccctttctgttccatgaatcactgcactttt 620
Query: 421 tatagattccctacttcttgcttttcccttctgtcacccaaatttcaaaaaaaaaaaaaa 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tatagattccctacttcttgcttttcccttctgtcacccaaatttcaaaaaaaaaaaaa- 679
Query: 481 ctatttc 487
|||||||
Sbjct: 680 ctatttc 686
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 886
Length adjustment: 10
Effective length of query: 477
Effective length of database: 876
Effective search space: 417852
Effective search space used: 417852
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
