Query= MSMg01no046_f16.b1 MSMg01no046_f16.b1 CHROMAT_FILE:
MSMg01no046_f16.b1 PHD_FILE: MSMg01no046_f16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:30 2005
(623 letters)
>mm_chr1_103391814_103392836
Length = 1023
Score = 1176 bits (608), Expect = 0.0
Identities = 617/620 (99%), Gaps = 1/620 (0%)
Strand = Plus / Minus
Query: 5 gaattcaatgttaatacattaaaattgatttatctacatggataagaagtgatgatgccc 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1017 gaattcaatgttaaaacattaaaattgatttatctacatggataagaagtgatgatgccc 958
Query: 65 tctagcacatgtccacatcactaaagcaactagattaactagactggccattgacacagg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 957 tctagcacatgtccacatcactaaagcaactagattaactagactggccattgacacagg 898
Query: 125 aaaaatagtgtatgtgcacagaggcctaaaatagatgaatgccgttgttttctggaaaac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 897 aaaaatagtgtatgtgcacagaggcctaaaatagatgaatgccgttgttttctggaaaac 838
Query: 185 ctgaaaaacaggaaaaatatagaaaatgaaagtatcactagatattttctacttcagggc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 ctgaaaaacaggaaaaatatagaaaatgaaagtatcactagatattttctacttcagggc 778
Query: 245 cttcatatgtaaaatcctaatgacaccatatctgccatttatatatagataaaatagtta 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 cttcatatgtaaaatcctaatgacaccatatctgccatttatatatagataaaatagtta 718
Query: 305 aaataaaatatataattttatagaaatatgtatttctgaatttttttcaaaacttttcaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 aaataaaatatataattttatagaaatatgtatttctgaatttttttcaaaacttttcaa 658
Query: 365 taacttcttggcttagatatgaaaagtctcaaagacatttaaagggtaaggaagcaaaag 424
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 657 taacttcttggcttagatatgaaaagtctcaaagacatttaaagggtaaagaagcaaaag 598
Query: 425 aaaaatatgaatgtcttaagaacacttctactgctgtgataatagcaaattagaggaaat 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 aaaaatatgaatgtcttaagaacacttctactgctgtgataatagcaaattagaggaaat 538
Query: 485 ttggtttattc-tttttttttccattttttattaggtatttagctcatttacgtttccaa 543
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 ttggtttattcttttttttttccattttttattaggtatttagctcatttacgtttccaa 478
Query: 544 tgctataccaaaagtcccccatacccacccacccccactcccctacccgcccactccccc 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 tgctataccaaaagtcccccatacccacccacccccactcccctacccgcccactccccc 418
Query: 604 tttttggccctggcgttccc 623
||||||||||||||||||||
Sbjct: 417 tttttggccctggcgttccc 398
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space: 620969
Effective search space used: 620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no046_f16.g1 MSMg01no046_f16.g1 CHROMAT_FILE:
MSMg01no046_f16.g1 PHD_FILE: MSMg01no046_f16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:30 2005
(414 letters)
>mm_chr1_103254836_103255649
Length = 814
Score = 735 bits (380), Expect = 0.0
Identities = 405/418 (96%), Gaps = 10/418 (2%)
Strand = Plus / Plus
Query: 1 agctgttcactcatcttcaaaattgcagccatagtggttgagttatagacataaagcttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agctgttcactcatcttcaaaattgcagccatagtggttgagttatagacataaagcttt 260
Query: 61 tgaaataaagcttggaatataatgagctcaatacatgtaagctgttaatatacagcaata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaaataaagcttggaatataatgagctcaatacatgtaagctgttaatatacagcaata 320
Query: 121 ttgcagaatgtcttccaagtctaaatgccaatatttatataaagcttttgctgagctata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgcagaatgtcttccaagtctaaatgccaatatttatataaagcttttgctgagctata 380
Query: 181 aaaattggcatataaacatagtatatattcttagagtaatgttaggtctcaatgaatgta 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaattggtatataaacatagtatatattcttagagtaatgttaggtctcaatgaatgta 440
Query: 241 tgtaatatgtattttttcaatatttatcactttaattcatgtgtatatttgtgtgtgaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtaatatgtattttttcaatatttatcactttaattcatgtgtatatttgtgtgtgaca 500
Query: 301 gtgagtgtgatgatgatgatgatgatgatgatgatgacaatgtgtgtgtgtgtgtg---- 356
||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 501 gtgagtgtgatgatgat-a-----atgatgatgatgacaatgtgtgtgtgtgtgtgtgtg 554
Query: 357 cgtgttacttgtatatattcaggaacaagtgtaccctacaagatattcgcatgtagtg 414
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 555 cgtgttacttgtatatattcaggaacaagtgtaccctagaagagattcgcatgtagtg 612
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 814
Length adjustment: 9
Effective length of query: 405
Effective length of database: 805
Effective search space: 326025
Effective search space used: 326025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
