Query= MSMg01no046_h17.b1 MSMg01no046_h17.b1 CHROMAT_FILE:
MSMg01no046_h17.b1 PHD_FILE: MSMg01no046_h17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:39 2005
(540 letters)
>mm_chr1_18518736_18519674
Length = 939
Score = 868 bits (449), Expect = 0.0
Identities = 515/537 (95%), Gaps = 3/537 (0%)
Strand = Plus / Minus
Query: 5 gaattcagagattttagggaaaagacaatgcttgtatatgcttgtgaaaattgaagttat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 gaattcagagattttagggaaaagacaatgcttgtatatgcttgtgaaaattgaagttat 680
Query: 65 tagtataaagtaacattgacagatacatgtgagtcgaattacagaag-ttttcactgtca 123
||||||||| ||||||||||||| |||||| ||||||||||||| || |||||||||| |
Sbjct: 679 tagtataaaataacattgacagacacatgtcagtcgaattacag-agtttttcactgtta 621
Query: 124 gatgatttggaagtcaactgtgtttttctgtggtcttatcttagaagtttgccagaggtt 183
||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 620 -atgatttggaaatcagctgtgtttttctgtggtcttatcttagaagtttgccagagatt 562
Query: 184 gaggatccaggtatccccaggtttaatttgctctgccagttttctatacaaaacaaaaca 243
|| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 561 gacgatccaggtatcctcaggtttaatttgctctgccaattttctatacaaaacaaaaca 502
Query: 244 aaaaccgagaaacatgtggtcttctgatactccacaaactattctggtttttgtactttt 303
|||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct: 501 aaaaccgagaaacatgtggtcttctgataccccacaaactattccggtttttgtactttt 442
Query: 304 gaacctgataattttaaagtgttttgactattttggtttgtttctgaattaggttccact 363
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 441 gaacctgataattttaaagtgttttgactattttggtttgtttctgaattaggttccatt 382
Query: 364 tcacttgatttatggtcaaaatattcatttatatttgaggaaatgtttgatttatttaca 423
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 tcacttgatttatggtcaaaatattcatttatatttgaggaaacatttgatttatttaca 322
Query: 424 ttgagaaagatgaaataacctttgtgtaaagcttcattagtagcattttagaatatattc 483
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 ttgagaaagatgaaataacctttgtgtaaagcttcatttgtagcattttagaatatattc 262
Query: 484 aaataaaatcagagtttctgtagcccatctgtctgtaaaagttatatactactaatt 540
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 261 aaataaaatcagagtttctgtagcccatctacctgtaaaagttatatacttctaatt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 939
Length adjustment: 10
Effective length of query: 530
Effective length of database: 929
Effective search space: 492370
Effective search space used: 492370
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no046_h17.g1 MSMg01no046_h17.g1 CHROMAT_FILE:
MSMg01no046_h17.g1 PHD_FILE: MSMg01no046_h17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:39 2005
(545 letters)
>mm_chr1_18364571_18365515
Length = 945
Score = 1017 bits (526), Expect = 0.0
Identities = 538/542 (99%)
Strand = Plus / Plus
Query: 1 tttgtttagctctgagccccattttttaatggggttatttgattttctggagtccacctt 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 tttgtttagctctgagccccattttttaatggggttatttgattttctgaagtccacctt 260
Query: 61 cttgagttctttatatatagtggatattagtcccctatctgatttaggataggtaaagat 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttgagttctttatatatattggatattagtcccctatctgatttaggataggtaaagat 320
Query: 121 cctttcccaatctgttggtggcctttttgtcttattgacagtgtcttatgccttacagaa 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctttcccaatgtgttggtggcctttttgtcttattgacagtgtcttatgccttacagaa 380
Query: 181 gctttgcagttttatgaggtcccatttgtcaattctcgatcttacagcacaagccattgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctttgcagttttatgaggtcccatttgtcaattctcgatcttacagcacaagccattgc 440
Query: 241 tgttgtgttcaagaatttcccccctgtgcccatatcttcgaggcttttccccactttctc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgttgtgttcaagaatttcccccctgtgcccatatcttcgaggcttttccccactttctc 500
Query: 301 ctctgtaagtttcagtgtctctggttttgtgtggatagatgacatatttctaatatgtat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctctgtaagtttcagtgtctctggttttgtgtggatagatgacatatttctaatatgtat 560
Query: 361 gtgatgtttggatttatcatgaacttggcacattctagaattaacctgagaaagaagtcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtgatgtttggatttatcatgaacttggcacattctagaattaacctgagaaagaagtcc 620
Query: 421 caaagagtaactgtttagattgattgacctacgggcttgcctgtgagagattttcttaac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caaagagtaactgtttagattgattgacctacgggcttgcctgtgagagattttcttaac 680
Query: 481 ccggcggtttaatatgagaagacccactgaatgtgaaaggcattacttcatgtggtctga 540
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccggtggtttaatatgagaagacccactgaatgtgaaaggcattacttcatgtggtctga 740
Query: 541 aa 542
||
Sbjct: 741 aa 742
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space: 500225
Effective search space used: 500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
