Query= MSMg01no046_m19.b1 MSMg01no046_m19.b1 CHROMAT_FILE:
MSMg01no046_m19.b1 PHD_FILE: MSMg01no046_m19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:02 2005
(608 letters)
>mm_chr1_36255586_36256592
Length = 1007
Score = 770 bits (398), Expect = 0.0
Identities = 437/450 (97%), Gaps = 1/450 (0%)
Strand = Plus / Plus
Query: 159 agtactctagaccgtgcagtggtgcagtactttagacagtgcagtggtgcagtactctag 218
|||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 359 agtactctagacagtgcagcggtgcagtactctagacagtgcagtggtgcagtactctag 418
Query: 219 acagtgcagtggtgcactactctagacagtgcagtgatacagttctctagacaggacaga 278
||||||||||| | || | ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 419 acagtgcagtgattcagttctctagacagttcagtgatacagttctctagacaggacaga 478
Query: 279 ggtacagtacacgagtcagtacagtgatacaatattgctagacagcagagtgccgtgcaa 338
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 479 ggtacagtacacgagacagtacagtgatacaatattgctagacagtagagtgccgtgcaa 538
Query: 339 agggagttaccagataccaacaacagaattttggatgaactctgaggaacaccttcactt 398
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 539 aaggagttaccagataccaacaacagaattttggatgaactctgag-aacaccttcactt 597
Query: 399 tccagtactcagaggactaggaaaaggtatacttctgaattctagcactgcatgggaaaa 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 tccagtactcagaggactaggaaaaggtatacttctgaattctagcactgcatgggaaaa 657
Query: 459 ccaaacagtgagaagctgttgtgtctcatgcttcacagacatggcagcatcaatcagaaa 518
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 658 ccaaacagtgagaagctgttgtgtctcatgcttcacagacacggcagcatcaatcagaaa 717
Query: 519 acaatatgagaacacaaaaatatagaaaacacacatctacatatacagcaatgacaaaag 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 acaatatgagaacacaaaaatatagaaaacacacatctacatatacagcaatgacaaaag 777
Query: 579 aggctatatatctgaaagaataaagagggg 608
||||||||||||||||||||||||||||||
Sbjct: 778 aggctatatatctgaaagaataaagagggg 807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 57
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1007
Length adjustment: 10
Effective length of query: 598
Effective length of database: 997
Effective search space: 596206
Effective search space used: 596206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no046_m19.g1 MSMg01no046_m19.g1 CHROMAT_FILE:
MSMg01no046_m19.g1 PHD_FILE: MSMg01no046_m19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:02 2005
(527 letters)
>mm_chr1_36404089_36405015
Length = 927
Score = 1004 bits (519), Expect = 0.0
Identities = 525/527 (99%)
Strand = Plus / Minus
Query: 1 agtgagtaaagaaagaagcatcggtggctctgtccctaatgtctgtctgtcccactcccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 agtgagtaaagaaagaagcatcggtggctctgtccctaatgtctgtctgtcccactcccc 668
Query: 61 tccatcccaacatggtcctctgctcaccaccccttttacttttaatgaggccaaaggctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 tccatcccaacatggtcctctgctcaccaccccttttacttttaatgaggccaaaggctc 608
Query: 121 cattacttaaactaaggcttcttatgaagtgccactaacaagtatgagtgggtgggtgaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 cattacttaaactaaggcttcttatgaagtgccactaacaagtatgagtgggtgggtgaa 548
Query: 181 ggcaacaaaagaggctgggtacctgggatctgtgtacatgctctgtaagtggcgcttggg 240
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 547 ggcaacaaaagaggctgggtacctgggatctgtgtacatgctctgtaagtggtacttggg 488
Query: 241 actagtggaatttccttagaatttagtgaaggcagagccagcaggttgctgtatctctgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 actagtggaatttccttagaatttagtgaaggcagagccagcaggttgctgtatctctgg 428
Query: 301 gtagcatgattagtggagaaatgtaaggtggtctggaaggctgaatggtgagctgggttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 gtagcatgattagtggagaaatgtaaggtggtctggaaggctgaatggtgagctgggttt 368
Query: 361 aagatgggagccatgagtgtcagtaggatagcagcatccatacaaccatgcttaggcaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 aagatgggagccatgagtgtcagtaggatagcagcatccatacaaccatgcttaggcaga 308
Query: 421 gctgatgggtgggtggggaacagtagttaacagaactctcactgcctgctgacccctctg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gctgatgggtgggtggggaacagtagttaacagaactctcactgcctgctgacccctctg 248
Query: 481 tttggaggtgacttgccctagcttgttgaggcttggcaacagcctcg 527
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tttggaggtgacttgccctagcttgttgaggcttggcaacagcctcg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space: 474089
Effective search space used: 474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
