BAC Information

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BAC

Clone NameMSMg01-046N10
Chromosome1 (Build37)
Map Location 42,717,608 - 42,860,107
singlet/doubletdoublet
Overlap gene2610017I09Rik, Pou3f3
Upstream geneLOC383634, LOC666582
Downstream geneMrps9, Gpr45, LOC100041588, Tgfbrap1, AI597479, Fhl2, EG666642, EG666644, LOC100041644, Nck2, 1500015O10Rik, Uxs1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-046N10.T7 (MSMg01no046_n10.b1)MSMg01-046N10.TJ (MSMg01no046_n10.g1)
ACCAG277118AG277119
length748753
length of high quality
(start - end)
382 (105 - 486)345 (136 - 480)
definitionCHROMAT_FILE: MSMg01no046_n10.b1 PHD_FILE: MSMg01no046_n10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:07:05 2005CHROMAT_FILE: MSMg01no046_n10.g1 PHD_FILE: MSMg01no046_n10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:07:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,859,730 - 42,860,107)(42,717,608 - 42,717,952)
sequence
CTTTTTTTTCTCCTCTTTTTTTTTTTTTTTTTTTCTTTCCTTTTTCTTTT
TTCTCTTCCTCTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGA
AGACCGCGGAATTCCATCCTATTCCTCTTAAGCTACGAGCCTTACAACCT
GCAGATTCTACACCTGGGAGGCTTGATGAACCACAGACTTCATCCATCTC
TTTGCTCATTCCCTTCTCAGTCATTCTGATGCCCAAGACTTATAAGGTGA
GATTTGTCCCTTGCGTACCCAGGATCATCCCATATGCTAAAGAAAGTCCT
CATCTTGGCTGCCTCTCCCTGCTAATCACTCTAGGCAATCCTCTCGGTCT
TGATCTCCCTGCAACACTAGAAGGGAAACTTTCCTCTTTCTTAAGGGGTC
TGGTCTTATGAGCCTTGGTTTGATGTGTTTAGGAGCTCTGGTGTCTACCT
TGATGGTTCATGTATATCTGTCAAGGCCTCCAGACTGCTGCTCAGTGGAT
CCAAGTCTTGCTTCCACTCTTACTTTTCTATTTTTACTTTCACACCCACT
GTGCTTTTCTGATTTGGCTCTTTAGGGCCGTTGATTTGAACTAGAGCTTA
AAATGAATTATTTCTCATTCCTAGATTTTGGTGGGATTGTTGTTATTGTT
GCTTATCCTTTGGCTAATCTATATGCTGGTGGCTCGATAAATGTCCAAAT
CACTAAAGACCCCTGTATAGAAACTTTGGTTCCTGTGTAAGCTTGTAA
TTCCCTTTTCTCTTTTTTTCTTTTTTTTCTCTACTTTTCTCCTTTCTTCT
TCTNCATTTTCGATGATATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTGACACGCTCAGC
AACACAGGGAGTGACTCCTCGTCTCAAAACAAAGACTTCTGGAAGCCACT
CACAAAAGCCTCTGGGAATTATGATCGAGGAAGGACGGTCTCTTGAAATC
CAGCAAATGGCCTCAGAGGAAAGCAGTGCACCCAGCCACCATCGGGAGAG
ACTTAACCTCCTCGGCAAGGAACAGGACCTGAAAGATGATGCCTGAGGTG
GGATTGGAAGTGAAAATGGAAAGAATGCATAAACGAGAGCCACTTACTCG
TGGCAGGCTAGAGGGAAATGGTGAGCGATACCTGCGTGTATGTATTACAG
GAAAAGATTTGTGATCCATCTTTTGCATAAGCTACCAGTGGGCAACTAGG
CTTGTTCTCCCTAAACACCCTTCTGAGATGCAGCTTAAATAAACCCCCAA
CCTCTTAGCTCTAGACAGCTCTCTTCTCCGATACACATCAGTCATTTTCC
CCAGAATACACCCAGTAAATGAGACACTTGGTCCAATCTTCAAAAAGTCT
TTGCAGCCTCTGGGGTACCGTTTTGCCTTTTTAAAAGATCACTGCAATGT
TTCCAAATTATATTAATGCATCTGCTAAAGTTATTTTTTCCCCCAATCAC
ACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no046_n10.b1 MSMg01no046_n10.b1 CHROMAT_FILE:
MSMg01no046_n10.b1 PHD_FILE: MSMg01no046_n10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:05 2005
         (382 letters)



>mm_chr1_42859526_42860307
          Length = 782

 Score =  661 bits (342), Expect = 0.0
 Identities = 369/378 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccatcctattcctcttaagctacgagccttacaacctgcagattctacacctggg 64
           |||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 gaattccatcctaaacatcttaagctacgagccttacaacctgcagattctacacctggg 523

                                                                       
Query: 65  aggcttgatgaaccacagacttcatccatctctttgctcattcccttctcagtcattctg 124
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 aggcttgatgaaccgcagacttcatccatctctttgctcattcccttctcagtcattctg 463

                                                                       
Query: 125 atgcccaagacttataaggtgagatttgtcccttgcgtacccaggatcatcccatatgct 184
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 atgcccaagacttagaaggtgagatttgtcccttgcgtacccaggatcatcccatatgct 403

                                                                       
Query: 185 aaagaaagtcctcatcttggctgcctctccctgctaatcactctaggcaatcctctcggt 244
           |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 402 aaaggaagtcctcatcttggctgcctctccctgctgatcactctaggcaatcctctcggt 343

                                                                       
Query: 245 cttgatctccctgcaacactagaagggaaactttcctctttcttaaggggtctggtctta 304
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| 
Sbjct: 342 cttgatctccctgcaacactagaagggaaactttcctctttcttgaggggtctggtcttg 283

                                                                       
Query: 305 tgagccttggtttgatgtgtttaggagctctggtgtctaccttgatggttcatgtatatc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 tgagccttggtttgatgtgtttaggagctctggtgtctaccttgatggttcatgtatatc 223

                             
Query: 365 tgtcaaggcctccagact 382
           ||||||||||||||||||
Sbjct: 222 tgtcaaggcctccagact 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 782
Length adjustment: 9
Effective length of query: 373
Effective length of database: 773
Effective search space:   288329
Effective search space used:   288329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no046_n10.g1 MSMg01no046_n10.g1 CHROMAT_FILE:
MSMg01no046_n10.g1 PHD_FILE: MSMg01no046_n10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:05 2005
         (345 letters)



>mm_chr1_42717408_42718152
          Length = 745

 Score =  636 bits (329), Expect = 0.0
 Identities = 341/345 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtgacacgctcagcaacacagggagtgactcctcgtctcaaaacaaagacttctggaag 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 agtgacacgctcagcaacacagggagtgactcctcgtctcaaaacaaagacttccggaag 260

                                                                       
Query: 61  ccactcacaaaagcctctgggaattatgatcgaggaaggacggtctcttgaaatccagca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccactcacaaaagcctctgggaattatgatcgaggaaggacggtctcttgaaatccagca 320

                                                                       
Query: 121 aatggcctcagaggaaagcagtgcacccagccaccatcgggagagacttaacctcctcgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatggcctcagaggaaagcagtgcacccagccaccatcgggagagacttaacctcctcgg 380

                                                                       
Query: 181 caaggaacaggacctgaaagatgatgcctgaggtgggattggaagtgaaaatggaaagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaggaacaggacctgaaagatgatgcctgaggtgggattggaagtgaaaatggaaagaa 440

                                                                       
Query: 241 tgcataaacgagagccacttactcgtggcaggctagagggaaatggtgagcgatacctgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 441 tgcataaacgagagccacttactcgtggcaggctagagggaaatggtgagcgacacctgc 500

                                                        
Query: 301 gtgtatgtattacaggaaaagatttgtgatccatcttttgcataa 345
           ||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 501 gtgcatgtattaaaggaaaagatttgtgatccatcttttgcataa 545


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 745
Length adjustment: 9
Effective length of query: 336
Effective length of database: 736
Effective search space:   247296
Effective search space used:   247296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)