BAC Information

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BAC

Clone NameMSMg01-047D03
Chromosome1 (Build37)
Map Location 134,536,215 - 134,705,817
singlet/doubletdoublet
Overlap geneNfasc
Upstream geneCtse, 5430435G22Rik, Slc26a9, 4732466D17Rik, Slc41a1, Rab7l1, Nucks1, Slc45a3, Elk4, Mfsd4, Pctk3, LOC100042221, Lemd1, EG638532, Klhdc8a, Nuak2, Tmcc2, Ripk5, Rbbp5, Tmem81, Cntn2
Downstream geneLrrn2, Mdm4, LOC638636, Pik3c2b, Ppp1r15b, Plekha6, Golt1a, Kiss1, LOC100038824, Ren1, Etnk2, Sox13, LOC667371, Snrpe, Zc3h11a, LOC667118, Lax1, Atp2b4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-047D03.T7 (MSMg01no047_d03.b1)MSMg01-047D03.TJ (MSMg01no047_d03.g1)
ACCAG277369AG277370
length684692
length of high quality
(start - end)
539 (44 - 582)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no047_d03.b1 PHD_FILE: MSMg01no047_d03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:07:30 2005CHROMAT_FILE: MSMg01no047_d03.g1 PHD_FILE: MSMg01no047_d03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:07:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,705,283 - 134,705,817)(134,536,215 - 134,536,500)
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACATGTGTAATAGCAGCCCAGCATTTGGTGCCTGCCCCACAGGGGGC
TCAGCCACCAGTCAGAGAAGCAGTAACACTGGACAACATTGTGCCCTAGT
TCCTGCATTAGTTCACAGATATAGGGCCTCTCTACGAGAGGAGAGTCAAG
AAACAGCATGAGAAGGCACTATAGACCGGTGTTTCTTGGAGCCATCTGTG
ACCAGGAGACTGTGTGCTAACCAGAGACCCTAGGATTAATAGAACATCAG
TTCTTGGGGACCCATAACAACACTTTATCCACTGTCACTGTGTTTTTGTG
GGCCAAGTGATAAATGGATTTTTACTTGACTGTTTCATGTAGACCAGTGG
GGATACTAATCCCATAGCATATTCCCGCAGTTCTAGAACAGATTCTTTGA
CCACTGGAGAACTCCCAGTATGGGCCCTGATCCCTAAAATAAGGGCTGAT
TTCATAGGCTGATTCTCAAGAGTCTGGAATGCCCCCAGGATTCAAGGAGA
AACTCAGTGGAACCATTAGCCTGTGCTTCAAGCAGTGCCCAGAGCAAAAG
AACGCTCTGTTGTGTGCCTGGTCACCACATGCAGCTTGGTCCTGTATAGA
CACTGTGAAGACCAATGTCTGTGCAAGAACAGGA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGGAGGGGTGGTCATGTGGCTCT
CCAGTCCTGTGGACACTGGTTTCAGAGACAGCTGGATACCAGTTTCCCCA
GAGGTTGTTGCAGAGCTTTTGAAATCCATCCTTAGAAGTGAGTTAGCTGG
GTGTGGGCTTCGTGATGCTGTGGTCCCCGGTGGGTGTGGATAAGAGAGAA
TGCAGGTCCTTCCTCGAGAGGAGGTTCCCAAGTCAGATAAGAACTGGCTG
ATTGCTGTCCCCAGCTCATGCTGCCTGCCTACCTGACGAAGGACCTCCTC
TGCATCTGCGTGTCTAATGGGACAATGACATCTCAGTCACCACTGTGCTC
CCAAGAGATTTATTACTGGGACAGAATCAAGCCAGAAGAGAAGTTGTGGT
GATGCCTGTGACAGCCCGTCTGAGGACAAGGACAACAGTGCTTCTCTCTG
TCACCCCGCTGCAGGCCGCTCTTTCCTTTCACAGAGCTTGCTGTCTAGCA
ATGGCAGGTGGAGAATGAATTTGCTCTTTTGGTGTTCAAGAAGGAGAAGA
TAGTCTACTCCATTTCTGTTGGGGTGAGCCTCTTCTGCCCGGACCCCAGG
TCCTCTGCTCTTCTTGCCCTTTTTTCCTTGTTTGCCTCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no047_d03.b1 MSMg01no047_d03.b1 CHROMAT_FILE:
MSMg01no047_d03.b1 PHD_FILE: MSMg01no047_d03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:30 2005
         (539 letters)



>mm_chr1_134705079_134706017
          Length = 939

 Score =  973 bits (503), Expect = 0.0
 Identities = 527/535 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacatgtgtaatagcagcccagcatttggtgcctgccccacagggggctcagcca 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 gaattcacatgtggaatagcagcccagcatttggtgcctgccccacagggggctcagcca 680

                                                                       
Query: 65  ccagtcagagaagcagtaacactggacaacattgtgccctagttcctgcattagttcaca 124
           ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct: 679 ccagtcagagaagcagtaacattggacaacattgtgccctggttcctgcattagttcaca 620

                                                                       
Query: 125 gatatagggcctctctacgagaggagagtcaagaaacagcatgagaaggcactatagacc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gatatagggcctctctacgagaggagagtcaagaaacagcatgagaaggcactatagacc 560

                                                                       
Query: 185 ggtgtttcttggagccatctgtgaccaggagactgtgtgctaaccagagaccctaggatt 244
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 agtgtttcttggagccatctgtgaccaggagactgtgtgctaaccagagaccctaggatt 500

                                                                       
Query: 245 aatagaacatcagttcttggggacccataacaacactttatccactgtcactgtgttttt 304
           ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 499 aatagaacatcagttcttggggatccaaaacaacactttatccactgtcactgtgttttt 440

                                                                       
Query: 305 gtgggccaagtgataaatggatttttacttgactgtttcatgtagaccagtggggatact 364
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 439 gtgggccaagtgataaatggatttttacttgactgtttcatgtagaccagtggggacact 380

                                                                       
Query: 365 aatcccatagcatattcccgcagttctagaacagattctttgaccactggagaactccca 424
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gatcccatagcatattcccgcagttctagaacagattctttgaccactggagaactccca 320

                                                                       
Query: 425 gtatgggccctgatccctaaaataagggctgatttcataggctgattctcaagagtctgg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gtatgggccctgatccctaaaataagggctgatttcataggctgattctcaagagtctgg 260

                                                                  
Query: 485 aatgcccccaggattcaaggagaaactcagtggaaccattagcctgtgcttcaag 539
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 aatgcccccaggattcaaggagaaactcagtggaaccattagcctgtgcttcaag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space:   491441
Effective search space used:   491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no047_d03.g1 MSMg01no047_d03.g1 CHROMAT_FILE:
MSMg01no047_d03.g1 PHD_FILE: MSMg01no047_d03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:30 2005
         (287 letters)



>mm_chr1_134536015_134536701
          Length = 687

 Score =  553 bits (286), Expect = e-162
 Identities = 286/286 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggaggggtggtcatgtggctctccagtcctgtggacactggtttcagagacagctgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaggaggggtggtcatgtggctctccagtcctgtggacactggtttcagagacagctgga 260

                                                                       
Query: 61  taccagtttccccagaggttgttgcagagcttttgaaatccatccttagaagtgagttag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taccagtttccccagaggttgttgcagagcttttgaaatccatccttagaagtgagttag 320

                                                                       
Query: 121 ctgggtgtgggcttcgtgatgctgtggtccccggtgggtgtggataagagagaatgcagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgggtgtgggcttcgtgatgctgtggtccccggtgggtgtggataagagagaatgcagg 380

                                                                       
Query: 181 tccttcctcgagaggaggttcccaagtcagataagaactggctgattgctgtccccagct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccttcctcgagaggaggttcccaagtcagataagaactggctgattgctgtccccagct 440

                                                         
Query: 241 catgctgcctgcctacctgacgaaggacctcctctgcatctgcgtg 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catgctgcctgcctacctgacgaaggacctcctctgcatctgcgtg 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)