BAC Information

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BAC

Clone NameMSMg01-047J01
Chromosome1 (Build37)
Map Location 155,585,859 - 155,586,006
singlet/doubletsinglet
Overlap genenone
Upstream geneApobec4, Arpc5, Ncf2, Smg7, EG668097, Nmnat2, Lamc2, Lamc1, EG667795, EG626058, 1700012A16Rik, Dhx9, Npl, LOC626096, Rgs8
Downstream geneRgs16, Rnasel, LOC100043347, Rgsl1, 5830403L16Rik, EG433365, Teddm1, LOC100043357, Glul, LOC100043359, Cacna1e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-047J01.T7 (MSMg01no047_j01.b1)MSMg01-047J01.TJ (MSMg01no047_j01.g1)
ACCAG277587AG277588
length690790
length of high quality
(start - end)
481 (47 - 527)150 (76 - 225)
definitionCHROMAT_FILE: MSMg01no047_j01.b1 PHD_FILE: MSMg01no047_j01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:07:55 2005CHROMAT_FILE: MSMg01no047_j01.g1 PHD_FILE: MSMg01no047_j01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:07:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTGTGAAACTACATGTTCCTTGATGTAATGATTCTTAAACAATTA
AAGATTGAGGCATGGGGCACAGCCCAGCACAGTCCTGATGGCCTAGGTGC
ATGCTGTGTGTTCTTATCTTGGAAACAAAGTAGTAACTGCACAATGGTAG
TTCCAGATTAATGCTTGACTTGCAAAGAAAGTTGGAAGAAATTATTTGAA
GAAAATGAAATAGAGCCAACATTGGGACCCTAAGAAAGGAAAAAAAAAAC
TATTGAAGTTATGAAATAAGTTTTGTACAACATTTAAGAGTGGTTCCTGG
ATAATCAAGTATAGAATGCATAAAATTATATACTAGTAAAACTAAGTCAG
AACACTGGGACTCTCAGGAGAGTCATTGTGTGCTATGTGCAGAAGCAGAA
CTAGGGGAACTACTGAGTTAAGGGTTACCTTGATTCTTTCCGGCATTCTT
TCTGCTTTGCCCATGTCATTTATCATTAGAGTTTCACAAGAAAATTCACG
CAGCTGACCTCGGAGCTCTGAGTTCTGAGGTATAATAAGTCAAAAGTTAA
AGTTTACACAATACTATGTTTGCAATGATTATTATTTTTGGCCATAGTGC
CGGCAATAGGGGAAGCTTGAAACTTTGGCGAACTAACCAC
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTATGCAGTAAGGAAAACAATGTTTT
GTCACTTTCAGGATACAGAATTCCACTCTCCTAGGGGGCTTCTCCAGCAG
TAAGGACTGCTCTATGCTCTGTGAAGTAAAAGGTCGGGAAAGGAAGATGG
GAGGGAGTGGGAAGGAGGAAAGGACGCTTTCCTCCGCTGTCCCATTACCC
AATTTGTCCTCCCCCATTCCCCTCTCCCATATTGCGCTCCCTGTTTGCTT
TATATCCCCTTGACCCGCCACTTTCTCCAATACCATCTGGCGCGGTAATT
TCCCTTCAATTTTTTTTTTTCTTCCCCCCCCCCCCCTTGCGCCTTTTCGC
GCATCTCTTTTGTCCTACCGCTTTCCTTTCCACCTATCAATATATTTTCT
TCCTCTTGGGTGGCGGCTGGCTTTGCTTCCCTCACCATTTTTTATTTCAC
CCCCCCCCTTTGTCCTTTATTGTTTTCTCCATCTCTGTCACTTCCTAGAT
GTTCTCCCATTTCTTTGTTCCTACTTCTCTCTCTTCTCTTTTCTTTTTTT
TCTTTTTTCTCTCTCCGTGTCACCACCAACTCTCTTCGCCTTTTCCTTCT
CCTTCACCCTTTTTTTCGCCCCCCATTCCTCATTCCCTTTTGTTTTATCT
TTTTCATCTCTTTCTTTCCCCTCACTTTTTCCCCCCCTCCCTCCACTCTC
TTTTCTCATTTTATATTCCCCTACTTTTTCCCCTCCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no047_j01.g1 MSMg01no047_j01.g1 CHROMAT_FILE:
MSMg01no047_j01.g1 PHD_FILE: MSMg01no047_j01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:56 2005
         (150 letters)



>mm_chr1_155585659_155586207
          Length = 549

 Score =  281 bits (145), Expect = 2e-80
 Identities = 148/149 (99%), Gaps = 1/149 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatgcagtaaggaaaacaatgttttgtcactttcaggatacagaattccactctcctagg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 348 tatgcagtaaggaaaacaatgttttgtcactttcaggatacagaattcca-tctcctagg 290

                                                                       
Query: 61  gggcttctccagcagtaaggactgctctatgctctgtgaagtaaaaggtcgggaaaggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 gggcttctccagcagtaaggactgctctatgctctgtgaagtaaaaggtcgggaaaggaa 230

                                        
Query: 121 gatgggagggagtgggaaggaggaaagga 149
           |||||||||||||||||||||||||||||
Sbjct: 229 gatgggagggagtgggaaggaggaaagga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 150
Length of database: 549
Length adjustment: 8
Effective length of query: 142
Effective length of database: 541
Effective search space:    76822
Effective search space used:    76822
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)