Query= MSMg01no048_b11.b1 MSMg01no048_b11.b1 CHROMAT_FILE:
MSMg01no048_b11.b1 PHD_FILE: MSMg01no048_b11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:38 2005
(553 letters)
>mm_chr1_177723822_177724781
Length = 960
Score = 833 bits (431), Expect = 0.0
Identities = 472/491 (96%), Gaps = 11/491 (2%)
Strand = Plus / Minus
Query: 1 gtgttgcatatgtggagctcagaagaccca--tttgtggagctacttctc-------tcc 51
|||||||||||| ||||||||||||| || |||||||||||||||||| |||
Sbjct: 489 gtgttgcatatgcggagctcagaaga--caattttgtggagctacttctctccttcttcc 432
Query: 52 agggtttgagctcaggttttcacacttgtgtggcaactaaatttgacacattgagctatc 111
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 431 agggtttgagctcaggttttcacacttgtgtggcaactaaatttgacacactgagctatc 372
Query: 112 tttctggtccctaatttgtacttttaaattgggatgcacaccctccatcccaaatcactt 171
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 371 tttctggtccctaatttgtacttttaaattgggatgtgcaccctccatcccaaatcactt 312
Query: 172 gaactcttttgttaaattaaagctactgtttcacagtaaaaaactttaaggacattcaaa 231
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gaactcttttgttaatttaaagctactgtttcacagtaaaaaactttaaggacattcaaa 252
Query: 232 gtgatgccatagcatctttcagtaatttatatcattaaagtttgatattaaggttcagcc 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 gtgatgccatagcatctttcagtaatttatatcattaaagtttgatattaaggttcagcc 192
Query: 292 agtaaaggggcttgctgccaagcctggcaacctacatttgatccctgagacctgcatggt 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 agtaaaggggcttgctgccaagcctggcaacctacatttgatccctgagacctgcatggt 132
Query: 352 ggaagaggtgactctcacaggtttccttctgactttctcatcactgccacggcatgcatg 411
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 131 ggaagaggtgactctcacaggtttccttctgactttctcattactgccacggcatgcatg 72
Query: 412 tacatgtatgcatgtacaattatacatatacgcagataaataaagataataaaaatattt 471
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 71 tacatgtatgtatgtacaattatacatatacacagataaataaagataataaaaatattt 12
Query: 472 tatatgctcta 482
|||||||||||
Sbjct: 11 tatatgctcta 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 960
Length adjustment: 10
Effective length of query: 543
Effective length of database: 950
Effective search space: 515850
Effective search space used: 515850
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no048_b11.g1 MSMg01no048_b11.g1 CHROMAT_FILE:
MSMg01no048_b11.g1 PHD_FILE: MSMg01no048_b11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:38 2005
(696 letters)
>mm_chr1_177566978_177568073
Length = 1096
Score = 1324 bits (685), Expect = 0.0
Identities = 694/697 (99%), Gaps = 2/697 (0%)
Strand = Plus / Plus
Query: 1 cagagcaacaagggttatgtctttctctcctttgccttgaggaaagacaaatgtgcaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagagcaacaagggttatgtctttctctcctttgccttgaggaaagacaaatgtgcaaat 260
Query: 61 aaacacagaatgtgaggaacttttaaggagaaacacaagcaaattaggaagctgtcccat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaacacagaatgtgaggaacttttaaggagaaacacaagcaaattaggaagctgtcccat 320
Query: 121 gtctgagttacactggggtgacaacaatgatgctccttaaaatatctcagacacctaagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtctgagttacactggggtgacaacaatgatgctccttaaaatatctcagacacctaagg 380
Query: 181 agaaggcacgggtcttcagctcccgaccttagaaccctccactcaggacatccttttccc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaaggcacgggtcttcagctcccgaccttagaaccctccactcaggacatccttttccc 440
Query: 241 cccagatcctagggtcaacttttatctaggcaatggaccataccatggaagcagacctca 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cccagatcttagggtcaacttttatctaggcaatggaccataccatggaagcagacctca 500
Query: 301 gccctccactgacttgtgcgagactctgtgcctagcgtagccagtgagacccacgtatac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gccctccactgacttgtgcgagactctgtgcctagcgtagccagtgagacccacgtatac 560
Query: 361 tacactgcttgttgtctgtaccaaatattgcgttttctaccaaaatgtctatgtatgtac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tacactgcttgttgtctgtaccaaatattgcgttttctaccaaaatgtctatgtatgtac 620
Query: 421 agaaccaaatgaaaatatgaaaaatatggttttgatttctaggttggagcactgaatgcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agaaccaaatgaaaatatgaaaaatatggttttgatttctaggttggagcactgaatgcc 680
Query: 481 tgctttcttgcaaagaggaattttcaagttgatgtgtacgaca-ctagggaaggtaagtt 539
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 681 tgctttcttgcaaagaggaattttcaagttgatgtgtacga-agctagggaaggtaagtt 739
Query: 540 ggtcgtagaaaacaagagaaaagtttcttattccttgatctgtttctctagattttctga 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ggtcgtagaaaacaagagaaaagtttcttattccttgatctgtttctctagattttctga 799
Query: 600 ataaaagacaaatgttttgattaaaaaaaaatttaagagataactattagaatgttttta 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 ataaaagacaaatgttttgattaaaaaaaaatttaagagataactattagaatgttttta 859
Query: 660 aaacttcagtgatctaaatttaatcaaataccaatat 696
|||||||||||||||||||||||||||||||||||||
Sbjct: 860 aaacttcagtgatctaaatttaatcaaataccaatat 896
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 696
Length of database: 1096
Length adjustment: 10
Effective length of query: 686
Effective length of database: 1086
Effective search space: 744996
Effective search space used: 744996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
