BAC Information

Click to search

BAC

Clone NameMSMg01-048F22
Chromosome1 (Build37)
Map Location 150,645,786 - 150,646,416
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100042792, LOC435647, LOC100042813
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-048F22.T7 (MSMg01no048_f22.b1)MSMg01-048F22.TJ (MSMg01no048_f22.g1)
ACCAG278154AG278155
length1,1661,232
length of high quality
(start - end)		664 (52 - 715)288 (81 - 368)
definitionCHROMAT_FILE: MSMg01no048_f22.b1 PHD_FILE: MSMg01no048_f22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:09:13 2005CHROMAT_FILE: MSMg01no048_f22.g1 PHD_FILE: MSMg01no048_f22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:09:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCAATTTGTTTNNNNACAGTGGGCGCTAXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCTCATTAAACTTACATCGTTGAATCTGCATCTATCATAG
CAGGGAGCTGTGCTTTAATACTTCTACAGTGAGAAACTCTGAAGGCCATT
TTAAGTAACAAGATGATAATGGTTACAGAGGCAATGATCTTCCTGTGAAT
CACAGCTCTAAGGGATCGAGATTTTAGGGAAACAGAATTTTCTGTATTTG
TTCCACTAGATCTGGATGCTTGATCAATTGGGGGATGGTGACAATCAAGG
ATTGTAGAAACCATGTTGAAAGCCACTCTGAAATCTTGTCATTAAATGTA
TAATGATGATGTCAACTAAGTGTTCACACTAGCCAATCTATGAGGAATAG
TAAACTTGTTACTTTCACTCTTTTTTTACTGTCAGTTGTTTGTATTTTTC
CTCTCCCTCTCACCGCTGGAAAGAAAAAGAGCAAAACATGGTGATTCAGC
TCAGCCCATATGTCCAGACCTTTAGCTTTGCTGAATGTTTTAGCAAGGAG
ACAGATCAAAGTCATTGGTTGAGGATTCTTTATGAATTTCATTATCAATA
TTTCCCCATGAATAAGAGTTAATTATAATTGTGTAAAAAATCTGTTAGTT
TCTTTCTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGNAATTC
TGTAATACTCCTTTCTGNATACACTGAANTATTTTATACTATGTTAAAAT
GTGTTACCTAAAAATCTATAAAGGACTTTGTTCTAGTAATTTTAATCCAG
CATCTTGAAAACTTTGGTTATATATTACATCCTAAGACCTTCCAGGTTTG
TTTTATCCACTTGTTCTATTAACACCCTTTAATCAAAATTTTTAATCTCT
TTTATACCGTAACTTTTTTTTTTTAATCTTACTTCCTGTTTAAAATTAAT
TTATTGGGTTTTTAAATTTGTTTATTCTTATATTTTTTCTTATATATCTT
TATTATATCCTCTTTCTCTTTCATTTTTATTATATTAAATTTATTTCTTT
TTTTTTATTTTATCATTTTTTTCCTTTTTTTTTTTATTCTTTTTCTTCTT
TCTTTTCTTTTTTTATTTCTTTTTCTTTTTTTTTTTTTTTCTTTCTTTTC
TTTTCTTTTTTCTTCT

NCCGTTTATTTTTTAGGATGTGAGNCTGGGGCGCCXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTTTTTTTTTTCCCCCTG
AGACAGGGTTTCTCTGTATAGCCTTGGCTGTCCTGGGACTCACTCTATAG
ACCAGGCTGGCCTTGAACTCAGAAATCTGCCTGTCTCTGCCTCCCAAGTG
CTGGGATTAAAGGAGTGCCCCACCATTGCATGGCCTAAGAGTTCTAATAT
GTAGCAAAGAATGGCAATTAGGGCATCAATGGGAGAAGAGGCCCTTGATC
CTATGAAGTCTCTGGGCAGGAAGAATGGGATAGGCGGTTTCTTGGGGGGG
GAGGGGGATGACCTGNANNGGNNANAANNTTTTNNNTGTNNNTTANNTTA
TCNAGTTTTTTATTAAAAGGTTAATTCAGTTTCTCAGGAGGTCAGAATAC
TATTACTTTTTTCCCATTGAATTTAATGCCCTTGTGATACCGAATATACT
ATTTAATGTCAGAGCTTTCTTGTCCTTTGACCCCGTTTCTTCCTTCTGTT
CTACTCCCTTAATATATACTGTTTTTGTTCTGTATTCTTTTTTGTTTTCT
TTTTTTTTTAATATTTTTCTTTAATGTCTTTTTTTTTGGTCTCTAATACT
TCTTTATTTTGTTTTCTTTCTCTTTTTTCTTTCCTATCTTTTTTTTTTTC
TTTTCATTTATATTATTTTTTCTTTTTTATTCTTTGCTTTTCCTTTTTTT
TTTTTTTTTTTTTCTTATTTTTTATTTTTTTTTTTCTTTATTTTTTTATT
TTTTTTCTTTTTTTTTTCTTTTTTCTTTTTGTTTTTTTCTTATTTTTTTT
ATTTTTCTTTGTTATTTTTTCTTTTTCTTTTTTTTTTTTCTTTCTTCTTT
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTCTCTTTATTATTTTTTTTCTTTCTTTTTCTTTTCTTTTTTTC
TCTTTTTTCGCTTTTCTTCTTTTTTCTTTTTTTTGTTTCTTTTTTTTTTC
CATCTTTTTTTTTTTTTTTTATTCTTCTCTTTTTTTCTTCTTTTATCTTA
TTTTTTTTTCTTTTTTCTCTTATCTTTATTCTCTTTTTTTTTTATATTTT
TATTTTCTTTTTTTTTCATTATCTTTTTTTTCTTCTTTATCTTCCTCCTG
TCTTCTTTGCTTTTTTTCCTCTTATTCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no048_f22.b1 MSMg01no048_f22.b1 CHROMAT_FILE:
MSMg01no048_f22.b1 PHD_FILE: MSMg01no048_f22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:09:13 2005
         (664 letters)



>mm_chr1_150645589_150646653
          Length = 1065

 Score = 1166 bits (603), Expect = 0.0
 Identities = 621/631 (98%), Gaps = 8/631 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctcattaaacttacatcgttgaatctgcatctatcatagcagggagctgtgctt 64
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 198 gaattcctcattaaacttacattgttgaatctgcatctatcatagcagggagctgtgctt 257

                                                                       
Query: 65  taatacttctacagtgagaaac-------tctgaaggccattttaagtaacaagatgata 117
           ||||||||||||||||||||||       |||||||||||||||||||||||||||||||
Sbjct: 258 taatacttctacagtgagaaacagttaactctgaaggccattttaagtaacaagatgata 317

                                                                       
Query: 118 atggttacagaggcaatgatcttcctgtgaatcacagctctaagggatcgagattttagg 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 atggttacagaggcaatgatcttcctgtgaatcacagctctaagggatcgagattttagg 377

                                                                       
Query: 178 gaaacagaattttctgtatttgttccactagatctggatgcttgatcaattgggggatgg 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gaaacagaattttctgtatttgttccactagatctggatgcttgatcaattgggggatgg 437

                                                                       
Query: 238 tgacaatcaaggattgtagaaaccatgttgaaagccactctgaaatcttgtcattaaatg 297
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tgacaagcaaggattgtagaaaccatgttgaaagccactctgaaatcttgtcattaaatg 497

                                                                       
Query: 298 tataatgatgatgtcaactaagtgttcacactagccaatctatgaggaatagtaaacttg 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tataatgatgatgtcaactaagtgttcacactagccaatctatgaggaatagtaaacttg 557

                                                                       
Query: 358 ttactttcactcttttttt-actgtcagttgtttgtatttttcctctccctctcaccgct 416
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ttactttcactcttttttttactgtcagttgtttgtatttttcctctccctctcaccgct 617

                                                                       
Query: 417 ggaaagaaaaagagcaaaacatggtgattcagctcagcccatatgtccagacctttagct 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 ggaaagaaaaagagcaaaacatggtgattcagctcagcccatatgtccagacctttagct 677

                                                                       
Query: 477 ttgctgaatgttttagcaaggagacagatcaaagtcattggttgaggattctttatgaat 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 ttgctgaatgttttagcaaggagacagatcaaagtcattggttgaggattctttatgaat 737

                                                                       
Query: 537 ttcattatcaatatttccccatgaataagagttaattataattgtgtaaaaaatctgtta 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 ttcattatcaatatttccccatgaataagagttaattataattgtgtaaaaaatctgtta 797

                                          
Query: 597 gtttctttctgtttgtttgtttgtttgtttg 627
           |||||||||||||||||||||||||||||||
Sbjct: 798 gtttctttctgtttgtttgtttgtttgtttg 828


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1065
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1055
Effective search space:   689970
Effective search space used:   689970
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |