BAC Information

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BAC

Clone NameMSMg01-048I15
Chromosome1 (Build37)
Map Location 48,560,740 - 48,561,305
singlet/doubletsinglet
Overlap geneLOC674566
Upstream geneLOC666869, LOC546734
Downstream geneLOC100041936, LOC666903, LOC666909, 2900045O20Rik, LOC666924, C230029F24Rik, LOC627430, LOC100041981
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-048I15.T7 (MSMg01no048_i15.b1)MSMg01-048I15.TJ (MSMg01no048_i15.g1)
ACCAG278280AG278281
length1,0821,238
length of high quality
(start - end)		425 (8 - 432)581 (76 - 656)
definitionCHROMAT_FILE: MSMg01no048_i15.b1 PHD_FILE: MSMg01no048_i15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:09:36 2005CHROMAT_FILE: MSMg01no048_i15.g1 PHD_FILE: MSMg01no048_i15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:09:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCAGAAGGAACGCTAGCCCCGTCATTCTATGAGGCCACAGTTATGCTAC
ATATTGGTTTTTTTGTAGATGGAATGGTTTCTGTCTAATGAGATACTTGT
CACAATTTCCTTTCAAAGAGGACTTAATAAGAAAAATTTTTCTACTTCTA
TCATGTTTAATGTTTCAAATAGATTTTAAAAACTGGTTCAGTGCATATGA
CTTTTAGCTTCAGAAGATATCATGTACATTTAAGAGGCCTTTAACTGCTA
TAAATTAATCTGATTACTTAAAAAATTGTTAATACTGAGTTGTATACTTT
AAAACAAATTTTATTAGTTTGATAAAAAAAATGCAGTGTTGTAGATTGTC
TTCCCAACTGATACATCTACAACACAGCTCATGCATCGAAGACTCAGAGA
TCAATCTCCAAAATGACCGGAATGAATTAAGAATGAGAGGAATGGGCAGT
TTACTGTGAGATTATGACCTCTCGAAATGTCTGGAGCTATGTATAACTAA
CTCCAATATCATCTTAATGATTGATTAAACTTGACTTTATTCATGTTAAT
ACTGATGGACATGTATATATTTATGTGTATAAATCTTCTGATGCCTCATT
TCTACTTAAGATTTATATGTATCTATTGATTCCTGAAACTTTTATTATTA
TTCTTACCTAAGATTTATTTCTTTTTTTGTCTGATTTCTATACTTTACAA
TTTTTATTATTATATTTATTCCTATTCTATTTGGTAGTTTTTTCTATTCT
TTTTTTTATTTTTTTAAATTGTTTTTTTAATTTAATTTTTTCTTTATTTT
TACTATTTAATTATCTTTTCATTATTTTTATCTTCTCTTTAGTATTTATT
ATATTATTTTTTCTTTACTTTTTTACTTTTTTTTATTTTTATTTCTCTTT
TTCTTTCTTTAATTCTTTCTTTTTTCTTCTACTACTCTTTCTATCATTCT
TCTATGTCTTAATTTTTCTTTCTTTATATCCTCATTATTTTCTCACTATC
TTTATTTTTTCTTTTTATTTATTTATTCTTTACTCTACTTTTCATTTTTA
TTTTATTCATTTTATATTTATCTATATATTTG

NTTTTTTCTATGGAGGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCCATAGAAAGGGGATGGAATAAAGAGCACTT
CTTGCTGGAACGATTCAGAAACCAATACCTGAATTTTAGAATTACAATTG
TGAAAGTTTGTTATCCGTAATCCCTGGTGCTTCACAGTGGATCTTACAAA
GTCTATTGCTCTCTCTATCCTGGAGGCATCAACTCACAGATAGTTCCATA
TTAGGAATGTGAATATATCTATATCTATCTCTATATCTATCTCTATATCT
ATATCTACATCTATATCTACATCTATCTATATATGTGTGTAATTGTGTAT
ATGTACATGTATATGTATGTGTACATGTATATGTATATCAAGCATATATG
TGTCTCTAGGTGCCTATTATGACTGTATTCAGGTTGGAACATTGGCTTCA
AATTTCAATGTGTGGAAACATTTGAAATCATGCTAACACTACATGTACTG
ACCATGATTTGAGTATTAAGTACAAAATTCTGTAAAAAGAAAATCCTGAT
AACCAAAGGTTGTATTCTACCTGTGCAAGACCATTTCTCTTATTGTGTCC
TTCCTTAGCTACTCGTCCTTCCTTATGGATGGTTGAGGATTTGTGNTTCT
TCCTCCATTCACTTATGTTTGTTTGTTGNGCTTTGTTCGNTCTTTTTCTG
TATTTGCTAGCATTCGTTTCGCTTTTTATTTATGCATCTTCTTATATTAT
TTTTAATTATTCTTTGTTTTATTAATTTTTTTTTTTTCTTTTTTTCTTTT
ATTCTTTTTTCTTATTATTTCTATTTATATTAATTTTTTTATTTCTACTT
TCTATTTCTTTTTTATTTTTTTTTTTTCTTTTATCTTTTTTTTTTTTAAT
TTTCTTTTTTTCTTACGTTTTTTTTCTCTTTTTTTTTTCTCTTTTTTTAT
CTTTAGTTTTTTTTTATTTTTCTCATTTTATATTATCCTTATACTTTTTT
TTATTTTCTTTTTATTTTTTCTTTTTTTTTTTTTTTTTCTATACTTTTTT
TATTTTATTTATCTTTTATTTATCTATTAATTTTTATTCTTATATTTATA
TTTTCTCTTTTTATATTTTTTTTTCATTCTTTTCTTTTATCTTATTTTTT
TTCTCTCTTTTCTTTTTCTTTTCTATTTTTATATTATATTCACTTACTTT
TCTTTTTATTTATTTTTTTTATCTTCTTATCTTTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no048_i15.g1 MSMg01no048_i15.g1 CHROMAT_FILE:
MSMg01no048_i15.g1 PHD_FILE: MSMg01no048_i15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:09:36 2005
         (581 letters)



>mm_chr1_48560324_48561305
          Length = 982

 Score = 1004 bits (519), Expect = 0.0
 Identities = 554/566 (97%), Gaps = 1/566 (0%)
 Strand = Plus / Minus

                                                                       
Query: 17  agagcacttcttgctggaacgattcagaaaccaatacctgaattttagaattacaattgt 76
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 982 agagcacttcttgctggaaagattcagaaaccaatacctgaattttagaattacaattgt 923

                                                                       
Query: 77  gaaagtttgttatccgtaatccctggtgcttcacagtggatcttacaaagtctattgctc 136
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 922 gaaagttagttatccgtaatccctggtgcttcacagtggatcttacaaagtctattgctc 863

                                                                       
Query: 137 tctctatcctggaggcatcaactcacagatagttccatattaggaatgtgaatatatcta 196
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 862 tctctatcctggaggcatcaactcacagatagttacatattaggaatgtgaatatatcta 803

                                                                       
Query: 197 tatctatctctatatctatctctatatctatatctacatctatatctacatctatctata 256
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 tatctatctctatatctatctctatatctatatctacatctatatctacatctatctata 743

                                                                       
Query: 257 tatgtgtgtaattgtgtatatgtacatgtatatgtatgtgtacatgtatatgtatatcaa 316
           |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 742 tatgtgtgtatttgtgtatatgtacatgtatatgtatgtatacatgtatatgtatatcaa 683

                                                                       
Query: 317 gcatatatgtgtctctaggtgcctattatgactgtattcaggttggaacattggcttcaa 376
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 gcatatatgtgtctctaggtgcctattatgactgtattcaggttggaacattggcttcaa 623

                                                                       
Query: 377 atttcaatgtgtggaaacatttgaaatcatgctaacactacatgtactgaccatgatttg 436
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 atttcaatgtgtggaaacatttgaaatcatgctaacactacatgtactgaccatgatttg 563

                                                                       
Query: 437 agta-ttaagtacaaaattctgtaaaaagaaaatcctgataaccaaaggttgtattctac 495
           |||| |||| ||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 562 agtagttaattacaaaattctgtaaaaagaaaatcctgataaccaaaggttatgttctac 503

                                                                       
Query: 496 ctgtgcaagaccatttctcttattgtgtccttccttagctactcgtccttccttatggat 555
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ctgtggaagaccatttctcttattgtgtccttccttagctactcgtccttccttatggat 443

                                     
Query: 556 ggttgaggatttgtgnttcttcctcc 581
           |||||||||||||||  |||||||||
Sbjct: 442 ggttgaggatttgtgggtcttcctcc 417


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 982
Length adjustment: 10
Effective length of query: 571
Effective length of database: 972
Effective search space:   555012
Effective search space used:   555012
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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