BAC Information

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BAC

Clone NameMSMg01-049A06
Chromosome1 (Build37)
Map Location 27,866,210 - 27,866,898
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC677427, LOC100040952
Downstream geneEG433281, EG665903, Gm597, LOC435614
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-049A06.T7 (MSMg01no049_a06.b1)MSMg01-049A06.TJ (MSMg01no049_a06.g1)
ACCAG278623AG278624
length1,2191,222
length of high quality
(start - end)		796 (40 - 835)701 (78 - 778)
definitionCHROMAT_FILE: MSMg01no049_a06.b1 PHD_FILE: MSMg01no049_a06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:10:34 2005CHROMAT_FILE: MSMg01no049_a06.g1 PHD_FILE: MSMg01no049_a06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:10:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTATTTTNNNNNNTCATTGGGCGCTAAGACTCCTATGGGAGAGGATCCG
CGGAATTCACATATAAGCCTATACTCCTATTTCATGTTGGACAATCCTAC
ATGATATTTGAAGAGGAAAGTTACACACTATGTAAGAAAGAAACAATCTT
CAAATAGTGCTGGTCAGATTGTTGAGGATGTTGAGGAATGAACTAAATAT
CTCTCATGCCACACACAGTTCAACTCTAACTGGATCAAGGAAACCAAATA
AGTTCTGGTATTCTGAATTTGACAGGAAAGAAAGTATATAATACACTTAA
ATTCATAGGTACGGGAAAGGACTTTCTAAACAGGGCAGAATAATATATGT
ATTAAGACAAGTAATTGACAAATTACCATGTGAAATTCAGAAAAGGATAC
ATCATTCATTTCAGTGAAGCTATAGCCTAAAGAATGGATAAAAAAATTGA
TCAGATACACTTAAGAAAGATGTAATAACTAGAACATACAAAGAAATAAC
AAATTAATAGAAAGCATACAGGAATTTTAATCCAGTAAGCTGGCTGTTTT
GGCTAGGACTCACATCCAAAAACCTGGCTGGAACTCAGACAGGACCTCAG
TAAACACCTTTATTCTTTCTGGTTGGAATCTTTCAGTGCAAATCTTTATC
CCAATCAATGAAGTCTAACTGAGGAACCAAAAAGTGATGAATCAGAAAAA
GATTTGACACAGTCAAAGATAGGATAGATACAATTGTCAGGATAGAAGAT
TTTTAAAAGCAGGGCAAGGGGAGGATGGTCAGTTCCATAAGTTCCACTGA
ATGGAGTTGACTTCAGTGCATTTCTTCGAAATTTTGGCTTGCCACAATTA
TAATGGCTAAGATCAAGCGAACTTATGATCACAAATGATGGAATGGATGT
AGGACCAGGGAGAACACTGTTGGTAGGAGTGCAAACTTGTCCAGTTAATA
TGGAAACTACTGTGGAATTTCTTCCAAAGTGAGAATACCAAATTTTGTGT
GCTCAACTTTATCAGTTTACTCATAAAAGATTCCTTAACAAAATTTCCGG
GGGCAAACTTTGACTTTGTGCAAAAATTTATTGGGTATACCCCATACCCC
ATTAATTTCTCAAAAAACTTCATTTTGTAGAATGCCCTTTTTGGAAATTT
GAAAAAAAATGTAAATGGTTAAAAAATTTTAAACCCCTTTTTTTTCTTCT
TTTATAAGAAATAAGGTTT

CCATTTATTNNNNTTACAAGTGAGGCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTTTGTTTTAATGCTCACATT
TTGTTTGGCTTAAATGCAGCTGGGCAAACTCATAGCACTATAACTATGTC
TAGTTATATTTTATTAATAATATAAACTTTTCTGAATTTGGAAGGTATTT
GTTTAAATAATATTTTAATTTTTCAAAATTTGATTTTTTATTTTATAAAG
AATATATAACTACAAATAACACTTAAAGTGTTTCTGTGCTACATTTTCCT
TTTTTATTTTCTATGCTTAGATTATTATGTTTTGAAATATTGTTATTCAA
AACTTTAGTATATATTTTTATTGACATTAATTTTTCTCTTGAAAACTTCT
CTAAGAGATAGAGTAGTCACATGTTAACTTGCTGAAGATTGTAGGCTTTC
TCTTCTTTGGGAAAAGATTCCCCAAACTGTGACTCAAATATATTTCTCTC
TTAATTATGCTGTGTATTCTTTCCATATGCTAACGTCTTCCAGTGTCTTG
CCCTATATTTCCAGTCTTTCCAAGCTTGAGATATACATTTCTATGTGTAT
CAACCTCAAATCTACAGTATCTTGTTATGTCAATTAGAATTTTCTAGGAA
AATAATGCTGGTTTTCCTTTTCTTTTAATTAGTGTTTACTAGAAATGCTT
TTGAAACAGACTATGGTGTGTACAGTAACTCAATTTAAATTAGATCTATA
TTGCATTTGTTAAGGTTCCTAGTAGCATGGTCAAATAACAAGTAAATTGC
GGAAGAAAAAATTTATTCCTACTTAAAATTTTTTGGTCTTACTCCTTCAC
TGAGATAAATTGTTACNAGAATACTAAGATGGAACCTAGACTGTAGCGAC
AAAAAAGGAAACCCAAGAGGAGCAGCACTTGCTAACTACTTCATCCTGAT
TTGATTAGCATATCAGGAGGCCCCTGATGGTAAGAACCATCCTAAAGGGT
TGTGTGGTCCCATTATAATCAGGAATCCCGAAAATGGCCTTATACCAGAA
AGCCCTTAAATTGTTGGTGCCTTTTTCTAACAATGGCCGGCCTTTGGCGC
CATTCTCTTCTAAAGCCCGAAAGATTATCCCCTTTACAACCCCCCCCCAC
ACCTTTGGTAAAAAAATCCCCCAAGGGGGTTTAAATTTTATGGAAAAAAA
TTATATCGGTTTAAATATATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no049_a06.g1 MSMg01no049_a06.g1 CHROMAT_FILE:
MSMg01no049_a06.g1 PHD_FILE: MSMg01no049_a06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:10:34 2005
         (701 letters)



>mm_chr1_27865828_27866928
          Length = 1101

 Score = 1309 bits (677), Expect = 0.0
 Identities = 686/689 (99%)
 Strand = Plus / Minus

                                                                        
Query: 2    tctttgttttaatgctcacattttgtttggcttaaatgcagctgggcaaactcatagcac 61
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1071 tctttgttttaatgctcacattttgtttggcttaaatgcagttgggcaaactcatagcac 1012

                                                                        
Query: 62   tataactatgtctagttatattttattaataatataaacttttctgaatttggaaggtat 121
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1011 tataactatgtctagttatattttattaataatataaacttttctgaatttggaaggtat 952

                                                                        
Query: 122  ttgtttaaataatattttaatttttcaaaatttgattttttattttataaagaatatata 181
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 951  ttgtttaaataatattttaatttttcaaaatttgattttttattttataaagaatatata 892

                                                                        
Query: 182  actacaaataacacttaaagtgtttctgtgctacattttccttttttattttctatgctt 241
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 891  actacaaataacacttaaagtgtttctgtgctacattttccttttttattttctatgctt 832

                                                                        
Query: 242  agattattatgttttgaaatattgttattcaaaactttagtatatatttttattgacatt 301
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831  agattattatgttttgaaatattgttattcaaaactttagtatatatttttattgacatt 772

                                                                        
Query: 302  aatttttctcttgaaaacttctctaagagatagagtagtcacatgttaacttgctgaaga 361
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771  aatttttctcttgaaaacttctctaagagatagagtagtcacatgttaacttgctgaaga 712

                                                                        
Query: 362  ttgtaggctttctcttctttgggaaaagattccccaaactgtgactcaaatatatttctc 421
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711  ttgtaggctttctcttctttgggaaaagattccccaaactgtgactcaaatatatttctc 652

                                                                        
Query: 422  tcttaattatgctgtgtattctttccatatgctaacgtcttccagtgtcttgccctatat 481
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651  tcttaattatgctgagtattctttccatatgctaacgtcttccagtgtcttgccctatat 592

                                                                        
Query: 482  ttccagtctttccaagcttgagatatacatttctatgtgtatcaacctcaaatctacagt 541
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591  ttccagtctttccaagcttgagatatacatttctatgtgtatcaacctcaaatctacagt 532

                                                                        
Query: 542  atcttgttatgtcaattagaattttctaggaaaataatgctggttttccttttcttttaa 601
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531  atcttgttatgtcaattagaattttctaggaaaataatgctggttttccttttcttttaa 472

                                                                        
Query: 602  ttagtgtttactagaaatgcttttgaaacagactatggtgtgtacagtaactcaatttaa 661
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471  ttagtgtttactaaaaatgcttttgaaacagactatggtgtgtacagtaactcaatttaa 412

                                         
Query: 662  attagatctatattgcatttgttaaggtt 690
            |||||||||||||||||||||||||||||
Sbjct: 411  attagatctatattgcatttgttaaggtt 383


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 701
Length of database: 1101
Length adjustment: 10
Effective length of query: 691
Effective length of database: 1091
Effective search space:   753881
Effective search space used:   753881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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