BAC Information

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BAC

Clone NameMSMg01-049E16
Chromosome1 (Build37)
Map Location 32,853,456 - 32,853,961
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041238, Khdrbs2, EG408191
Downstream geneEG633498, LOC213711, LOC100040828, EG666108, Prim2, 1700001G17Rik, Rab23, Bag2, Zfp451
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-049E16.T7 (MSMg01no049_e16.b1)MSMg01-049E16.TJ (MSMg01no049_e16.g1)
ACCAG278799AG278800
length1,2221,266
length of high quality
(start - end)
506 (75 - 580)469 (125 - 593)
definitionCHROMAT_FILE: MSMg01no049_e16.b1 PHD_FILE: MSMg01no049_e16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:11:09 2005CHROMAT_FILE: MSMg01no049_e16.g1 PHD_FILE: MSMg01no049_e16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:11:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATGGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAATTCTTTGGA
TGAAATAGTACCCCTTTAGAAACATAGACTAATGTTGAAAATTAAATTGA
ACCCCTGCAACCTGAGCAAATGTGTGATGTTGAGAGAATTCCTACTTTAT
ATGTCGTTTCATTACCATTAATTTAAAGCATTAGCTGTTCCTGCCTTATA
TTCATAAGAATAAATGTAGTTTAATATTATCAAGTCTTCTGCAATGCTTT
CAGAAAAGTTTTCTTTGTCTCAATAACTCCAGGATAATATATTCTATTAT
GCAGTTTAATATATATTATCAAGCCCACTGCACCTCTTTCAGAAAATATT
TCTTTGTCTTAATTAATCCAGGGTAATATATCCTTTAAGAAGAGATATTG
ATATCTCTGTTGCTTAGACAAATGTCTTTCTTTCCAGGATATACTACTAC
TTTCTTTTTCATGGGAAGCCCCGTGTCTTCGGGTTTCGTTTGTTGTGATA
AAATACTGTGACCAAAAGCAACTTGCGGCTAAGGGTGAAGAGTTCATTTT
AGTTTATACTCACAATCCACCACTGAGTGAAGACAGGGAAGGAACTCAAG
TAACGAATCTGGGGGCAGGCAATAAAGCACTGATCATAGAGAAACACTGC
GTACTGGCTTGCTCCTCCTGGCTTGTTCAGTTGCTTTGTTTTGTATCCTA
GGACCACCTTTCCACGATGGCCCCACTTCCCATAGCCTGAGATCTTTCTT
ATCATTCTTTTATCAAGACAATGCCCCACAGATTTTGTTATAGGCCCAAT
TGGAATGTACCATTTTCTCCAGGGAAGTTTCCTTTTCTCTATTACCTTAA
GCTTCTGGTCAGTTTCATCATACCAATTGATCCTTGTCCTCTTTGACTAT
AATTACCTCTTCATTGTTAAACAACAAACCTTCCCTTTCTGGTTTGGCCC
CAATAATCCCTTATCACACACAAAAATATTACTGCCTTAATTATAAAACC
TTTTCAATTTTTTAAAAGATTCTACCGGCTCCAAAATTTTTCTAATTTCA
AACATCTCTTTTCTATTTTCCACAAATCTTTTATTATTTCAAAAAATTCC
CTTTTAAATACTCAAAATGTCTGTGTATCCAACTTTGTTTCACAAATCTT
TTAAGCGAAGTGTCCCCCCACTTCTGAGTAAGGGTTTTTCTTCTGTATCC
TCTCTCATAAGTTGCACTTAAA
NTAAAAACATGGTAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCCCTTAAGGGTTCCTTCTGTTTCAATTTATGGAA
TAGTTTGCCCATAATTGGCATTACATCTTCTTTGAAGTTCTGATAGAATT
TTGCACTAAACCCATATTTTCCTGGGATATTTTTGTTTTGGAGGCTTTTA
ATGACTTCTGCTATTTTTATGGGTTACGGACTGTTTAGGTGATTTATCTA
ATCCTAATTTAACTTTGGTACCTGGTATCTATCTAGAAATTGTCCATTTC
ATTCAGATTTTCCAGTCTTGTTGAGTGTAGGCTTTTGTAGTAGGATCTGA
TGATTTTTTTGAATTTCCTCACTTTTGGTTGTTATGTCTCCCTTTTCATT
TCTGATTTCGTTAATTTGCATACTTTCTCTGTGCCCTGGCTAAGTTAGTC
TGACTAACGGTTTATCTATCTTGTTGATTTCCTCAAGAACCAGCTCCTGG
TTTTGTTGACTATTTGTATAGTTCTTTTTATTTCTACCTGGTTGATTTCA
TCCCCAAAGTTTCGATTCATTTCCTGCAGTCTACTCCTCTTGGGTATATC
TGCTTCTCTTTGTTCTAGAGCTTTCAGGTGTGCTGTCAAGCTGCTAGCAT
ATGCTCTCTCCATTTTCCTTTTGGAGGCACTTCAGAGCCTATGACTTCTC
TCATAGCATTGCTTTTGGTATGTTGCGCCTTCATTTTCATTAAATCCTTA
AAAGTGCCCACTTTATTTCTTTATTTCCTCCTTGACCAACTTAATCTTTG
AAGTAAAAATTTTTTCACCTCCCATGTGAATGTGTAAATTTTTGGGTTAT
TGTTTTGGTTTTGTATTGTATTACTTTTGTTTTTTTTCTTTTACATTTTT
ACACAATACATATATCTTGTCTTATATTTTTTATTAATAATAAATTTTTC
TTTATTTTTATTGATAATTTCTTAACTTTAAACATACTTAATTTTCGTAT
TTCTAAACATATTCTGTTATTATATTTCTATTCATCCCATTCTTTTTACT
ACATTATTCATTATATTAATTAATNACATTCTCCTATTTCTATAATTTAG
AATAATAATTTATACTTTCTCTATTATTTTTATTTAAATATTCTTATATT
CACTACAAATCATTTAATTTATTTCTTACACAATTCATATTCATTTTATT
ATTACTCATTTCTTATTAATAATTCACTACTTTCTATATCCTAGATANCA
TTTTACTTCTGCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no049_e16.b1 MSMg01no049_e16.b1 CHROMAT_FILE:
MSMg01no049_e16.b1 PHD_FILE: MSMg01no049_e16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:11:09 2005
         (506 letters)



>mm_chr1_32853359_32854264
          Length = 906

 Score =  870 bits (450), Expect = 0.0
 Identities = 492/506 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagactaatgttgaaaattaaattgaacccctgcaacctgagcaaatgtgtgatgttgag 60
           |||||||||||||||||||||||||||  |||||||||||||| ||||||||||||||||
Sbjct: 603 tagactaatgttgaaaattaaattgaagtcctgcaacctgagcgaatgtgtgatgttgag 544

                                                                       
Query: 61  agaattcctactttatatgtcgtttcattaccattaatttaaagcattagctgttcctgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 agaattcctactttatatgtcgtttcattaccattaatttaaagcattagctgttcctgc 484

                                                                       
Query: 121 cttatattcataagaataaatgtagtttaatattatcaagtcttctgcaatgctttcaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 483 cttatattcataagaataaatgtagtttaatattatcaagtcttctgtaatgctttcaga 424

                                                                       
Query: 181 aaagttttctttgtctcaataactccaggataatatattctattatgcagtttaatatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 aaagttttctttgtctcaataactccaggataatatattctattatgcagtttaatatat 364

                                                                       
Query: 241 attatcaagcccactgcacctctttcagaaaatatttctttgtcttaattaatccagggt 300
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 363 attatcaagcccactgcacctctttcagaaaatatttttttgtcttaattaatccagggt 304

                                                                       
Query: 301 aatatatcctttaagaagagatattgatatctctgttgcttagacaaatgtctttctttc 360
           ||||||| ||||||||||||||| |||||| | |||||||||||||||||||||||||||
Sbjct: 303 aatatattctttaagaagagatactgatatatatgttgcttagacaaatgtctttctttc 244

                                                                       
Query: 361 caggatatactactactttctttttcatgggaagccccgtgtcttcgggtttcgtttgtt 420
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct: 243 caggatatactactactttctttttcatgggaagccctgtgtcttcgggtttcttttgtt 184

                                                                       
Query: 421 gtgataaaatactgtgaccaaaagcaacttgcggctaagggtgaagagttcattttagtt 480
           ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct: 183 gtgataaaatactgtgaccaaaagcaacttggggctaagggtgaagagttcattttagct 124

                                     
Query: 481 tatactcacaatccaccactgagtga 506
           |||| |||||||||||||||||||||
Sbjct: 123 tataatcacaatccaccactgagtga 98


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space:   444416
Effective search space used:   444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)