BAC Information

Click to search

BAC

Clone NameMSMg01-049E22
Chromosome1 (Build37)
Map Location 126,654,848 - 126,674,488
singlet/doubletdoublet
Overlap genenone
Upstream geneDpp10, LOC666998
Downstream geneActr3, Slc35f5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-049E22.T7 (MSMg01no049_e22.b1)MSMg01-049E22.TJ (MSMg01no049_e22.g1)
ACCAG278810AG278811
length1,2031,202
length of high quality
(start - end)		726 (83 - 808)800 (79 - 878)
definitionCHROMAT_FILE: MSMg01no049_e22.b1 PHD_FILE: MSMg01no049_e22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:11:11 2005CHROMAT_FILE: MSMg01no049_e22.g1 PHD_FILE: MSMg01no049_e22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:11:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,654,848 - 126,655,573)(126,673,695 - 126,674,488)
sequence
NCATTTTTNNNNNNNTCATTGGGCGCTAAGACTCCTAAGGGAGAGGATCC
GCGGAATTCTGCTTCTACAGGAACACCGTTAGAGAAAAAAAGGGAGCTCC
CAGGCCAACACACAGTACCGAGTTGAGCAAACCTTTAAAAATGATGTCTG
AATTACCAAACTATCCATATAAAACGTGATCAGCTCAAGGTTAAAGATGT
AGTTCAGTGGGTAGAATGCAGAGTAGGCAGAGATGGAAAGACCAGAAGTG
CTGGCTACAGATCAAGTTTGAAGCTAGGCAGGGATGCATCAAACTTTTTC
TCAATAACAACAACATCAACAACAGCAACAATTACAATAATAATAACAAA
ACATTTCATAAAATCAATTTATACTTTACATCCTCTCAATACTGAGTAAT
CTATTACAATTGGTTATGTTTTTATTATTCTGACATAGGCCAGGATAAAC
TGAGGAAGGGGAACCTTAAATTTAGAAAATTTCTTCAATTAGAATGGCCA
GTAGACAAATCTGTGAGTCATTTTCTTAATGATTGACATGTGAGAGCCCA
GCCTCCTCTGGTTGGTCCTGGGTGGTAAAGGAACACAAACCATGAAGCAA
GCTGTAAGTAGAGACTCCTTGTAGTCTCTACTTCAGTTTCTGCTACCAGG
TTCCTGTCTTGAGCTCTTGCCATGATTTTTTTCCATAAAAGATTCTAACC
TGAAAGTTTGAAAAGGCCCTTTGCATCCCAAGCAGCTTTTGATCATTGTC
TTTATGACAACAATAGAAAAATAAACTAGGGTGTCTGAATTTGAAAGTAT
AGGGGGGATTCTGAGTAGCATAGAAAAAGACAGGAAAATTTGCCAGCCCA
AAATAGAACACTAGCTAATCTTTACAGAAATATTTCAAAAGCCAGCAATG
GTCATATTAGAGCTGAAAAATTTTTGAATTAATAATCCTAACTATACGTT
TCATAACATTTTACATATTTTGGGGAAGTCTCTAAACATGGAATGAATGC
AGGAGATGGAAAGCCCGCAACTGCTTAAGAAAAGAACACTTGGTTACTAA
AAGCCAAACCCTTAACAGCCCTTTTAGCTCCCTTTTTGGCCAACCTTTCA
AAAAACACGAAATATTGGTTGTTTTCACCCCTTTATAACCAGTGGGGGTG
ACCCCCACCCGGGGTGAGAAGAACATAACCTTTTCTTGGTCAAATTTTAT
GGC

CCATTATTTNTNNTAGCTTGGAGGCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTAAAACCTGAAAGAATTGA
AAGCTTTATAGAGTGACTCACGAGCTGGTGTGAAGTTTTGAAAATGTTAA
ATGTGTGAATTCTTTCCAAATTCAGATCAGATGAAAATGTGTATTTTGCC
CAAAATGAGAGGAAGCAGAATGCTAGGGGACTTTTGGAACACTTTGGAAG
AGTAGGTGCCAGGGTCCTCCTTCTAAGGTGGGCTTTGAACTAGGAGACAA
TACTAAATCATGACTAGGAGAATATGTGTAGTGGGTCCATGAATAAGAGA
GAGGCAGAACAGGACCCTGGGAATATATGGAGCCTCAAAGAGGAGCTGAA
CCTTGAGTTATGGTTGTGTTGCTTTGCATACCTTTTGAAGTGTCCCAAGA
CAGTCACTAGCAGTGCATTGCTGACTCACAGTGCCTTCAACGCTATTGGC
CTCTTTATCTTCTCAAAAGGGTGGGTGTATGGAGTCAACACAACCAACAA
CATTCTATTTAGGGCCATATATACTAACTATGACAACTACTCTTTCTAAC
ACAGGGAGGAGTTTATCCTACAATGACCTTAAAAACATGACTCCAATTGA
TATCGAATGCCTAATTATGAAATACATACTTCTAAAAGTGTGTGTGGGTA
TGTGTGCATGTGCATGTGTGCATGCGTAGGTCAGAGGCTGATGTCAAGTA
TCACTTCTCAATTATTCTATACTTTAAATTTGAGCCAGAATCTCATGAAA
CTCTCATGAAACCCCAATTCACAACATTTCCTGACCAACTAACTCACAGT
TCCTCCTGTCTCAGTAACTCTATCAGAGGGATTACAAGTGTGTGTTACCA
CAGTCGTGCTATATTTCAAAAGCTGGTAGTATCACCATTGAATATACAAC
TAAAGACCATGACTATCTCACCCAATTCATCAGTAGCCAATAATTCACCT
GCAAAAAAGAGTGAATCCTTTTGAACTATGAGCCCTTTTCTGAACCATTA
TTAAAAGTTAAAAACTCCCGTCATGGGCTGTACCCAGAAAAGTGGATAAC
CGTTGCTTGTTCCGGAATTTTTATTCGGAAAGTACCCGGTCTGTCCCAAA
AGAAAAATTTTCCAAGAATTTCCCCAATTTTAAAGCTCTACCCTCTCTCC
CC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no049_e22.b1 MSMg01no049_e22.b1 CHROMAT_FILE:
MSMg01no049_e22.b1 PHD_FILE: MSMg01no049_e22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:11:11 2005
         (726 letters)



>mm_chr1_126654648_126655773
          Length = 1126

 Score = 1381 bits (714), Expect = 0.0
 Identities = 723/726 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaaaaaaagggagctcccaggccaacacacagtaccgagttgagcaaacctttaaaaat 60
           |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||
Sbjct: 201 agaaaaaaagggagctcccaggccaacacacagtaaggagttgagcaaacctttaaaaat 260

                                                                       
Query: 61  gatgtctgaattaccaaactatccatataaaacgtgatcagctcaaggttaaagatgtag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatgtctgaattaccaaactatccatataaaacgtgatcagctcaaggttaaagatgtag 320

                                                                       
Query: 121 ttcagtgggtagaatgcagagtaggcagagatggaaagaccagaagtgctggctacagat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcagtgggtagaatgcagagtaggcagagatggaaagaccagaagtgctggctacagat 380

                                                                       
Query: 181 caagtttgaagctaggcagggatgcatcaaactttttctcaataacaacaacatcaacaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caagtttgaagctaggcagggatgcatcaaactttttctcaataacaacaacatcaacaa 440

                                                                       
Query: 241 cagcaacaattacaataataataacaaaacatttcataaaatcaatttatactttacatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagcaacaattacaataataataacaaaacatttcataaaatcaatttatactttacatc 500

                                                                       
Query: 301 ctctcaatactgagtaatctattacaattggttatgtttttattattctgacataggcca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctctcaatactgagtaatctattacaattggttatgtttttattattctgacataggcca 560

                                                                       
Query: 361 ggataaactgaggaaggggaaccttaaatttagaaaatttcttcaattagaatggccagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggataaactgaggaaggggaaccttaaatttagaaaatttcttcaattagaatggccagt 620

                                                                       
Query: 421 agacaaatctgtgagtcattttcttaatgattgacatgtgagagcccagcctcctctggt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agacaaatctgtgagtcattttcttaatgattgacatgtgagagcccagcctcctctggt 680

                                                                       
Query: 481 tggtcctgggtggtaaaggaacacaaaccatgaagcaagctgtaagtagagactccttgt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tggtcctgggtggtaaaggaacacaaaccatgaagcaagctgtaagtagagactccttgt 740

                                                                       
Query: 541 agtctctacttcagtttctgctaccaggttcctgtcttgagctcttgccatgattttttt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agtctctacttcagtttctgctaccaggttcctgtcttgagctcttgccatgattttttt 800

                                                                       
Query: 601 ccataaaagattctaacctgaaagtttgaaaaggccctttgcatcccaagcagcttttga 660
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ctataaaagattctaacctgaaagtttgaaaaggccctttgcatcccaagcagcttttga 860

                                                                       
Query: 661 tcattgtctttatgacaacaatagaaaaataaactagggtgtctgaatttgaaagtatag 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 tcattgtctttatgacaacaatagaaaaataaactagggtgtctgaatttgaaagtatag 920

                 
Query: 721 ggggga 726
           ||||||
Sbjct: 921 ggggga 926


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 726
Length of database: 1126
Length adjustment: 10
Effective length of query: 716
Effective length of database: 1116
Effective search space:   799056
Effective search space used:   799056
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no049_e22.g1 MSMg01no049_e22.g1 CHROMAT_FILE:
MSMg01no049_e22.g1 PHD_FILE: MSMg01no049_e22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:11:11 2005
         (800 letters)



>mm_chr1_126673663_126674862
          Length = 1200

 Score = 1527 bits (790), Expect = 0.0
 Identities = 793/794 (99%)
 Strand = Plus / Minus

                                                                       
Query: 7   aacctgaaagaattgaaagctttatagagtgactcacgagctggtgtgaagttttgaaaa 66
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 826 aacctgaaagaattgaaagctttatagagtgactcatgagctggtgtgaagttttgaaaa 767

                                                                       
Query: 67  tgttaaatgtgtgaattctttccaaattcagatcagatgaaaatgtgtattttgcccaaa 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 tgttaaatgtgtgaattctttccaaattcagatcagatgaaaatgtgtattttgcccaaa 707

                                                                       
Query: 127 atgagaggaagcagaatgctaggggacttttggaacactttggaagagtaggtgccaggg 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 atgagaggaagcagaatgctaggggacttttggaacactttggaagagtaggtgccaggg 647

                                                                       
Query: 187 tcctccttctaaggtgggctttgaactaggagacaatactaaatcatgactaggagaata 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 tcctccttctaaggtgggctttgaactaggagacaatactaaatcatgactaggagaata 587

                                                                       
Query: 247 tgtgtagtgggtccatgaataagagagaggcagaacaggaccctgggaatatatggagcc 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 tgtgtagtgggtccatgaataagagagaggcagaacaggaccctgggaatatatggagcc 527

                                                                       
Query: 307 tcaaagaggagctgaaccttgagttatggttgtgttgctttgcataccttttgaagtgtc 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 tcaaagaggagctgaaccttgagttatggttgtgttgctttgcataccttttgaagtgtc 467

                                                                       
Query: 367 ccaagacagtcactagcagtgcattgctgactcacagtgccttcaacgctattggcctct 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 ccaagacagtcactagcagtgcattgctgactcacagtgccttcaacgctattggcctct 407

                                                                       
Query: 427 ttatcttctcaaaagggtgggtgtatggagtcaacacaaccaacaacattctatttaggg 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 ttatcttctcaaaagggtgggtgtatggagtcaacacaaccaacaacattctatttaggg 347

                                                                       
Query: 487 ccatatatactaactatgacaactactctttctaacacagggaggagtttatcctacaat 546
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 ccatatatactaactatgacaactactctttctaacacagggaggagtttatcctacaat 287

                                                                       
Query: 547 gaccttaaaaacatgactccaattgatatcgaatgcctaattatgaaatacatacttcta 606
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 gaccttaaaaacatgactccaattgatatcgaatgcctaattatgaaatacatacttcta 227

                                                                       
Query: 607 aaagtgtgtgtgggtatgtgtgcatgtgcatgtgtgcatgcgtaggtcagaggctgatgt 666
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 aaagtgtgtgtgggtatgtgtgcatgtgcatgtgtgcatgcgtaggtcagaggctgatgt 167

                                                                       
Query: 667 caagtatcacttctcaattattctatactttaaatttgagccagaatctcatgaaactct 726
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 caagtatcacttctcaattattctatactttaaatttgagccagaatctcatgaaactct 107

                                                                       
Query: 727 catgaaaccccaattcacaacatttcctgaccaactaactcacagttcctcctgtctcag 786
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 catgaaaccccaattcacaacatttcctgaccaactaactcacagttcctcctgtctcag 47

                         
Query: 787 taactctatcagag 800
           ||||||||||||||
Sbjct: 46  taactctatcagag 33


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 800
Length of database: 1200
Length adjustment: 10
Effective length of query: 790
Effective length of database: 1190
Effective search space:   940100
Effective search space used:   940100
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


| Home | SequenceCutter | Blast | Download |