Query= MSMg01no049_l08.b1 MSMg01no049_l08.b1 CHROMAT_FILE:
MSMg01no049_l08.b1 PHD_FILE: MSMg01no049_l08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:12:00 2005
(290 letters)
>mm_chr1_183177953_183178642
Length = 690
Score = 478 bits (247), Expect = e-139
Identities = 280/293 (95%), Gaps = 6/293 (2%)
Strand = Plus / Minus
Query: 1 acatactaagtggagataatggcgccagtgtctcttccttttccaagcttgtatgaaact 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 acatactaggtggagataatggcgccagtgtctcttccttttccaagcttgtatgaaact 431
Query: 61 ctccaagtttgcctcaggtaaggacttgagactatgtcacacaatccctataggccgtat 120
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 430 ctccaagtttgcctcaggtaaggacttgagactatgtcacacaatccctagaggccaaat 371
Query: 121 cctgaacaccaattccctctcagtccaagcagcatccttcctgtggcagagaaaggggta 180
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 cctgaaccccaattccctctcagtccaagcagcatccttcctgtggcagagaaaggggta 311
Query: 181 cccggattaaccttgaacttttatctacttag-tttttttactacaagatcaatgggcta 239
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 310 ccaggattaaccttgaacttttatctacttagatttttttactacaagatcaatgggcta 251
Query: 240 tggctctatgcttaattcact--acctgacttgcttcctttctggacagagaa 290
||||||||||||||||| | |||||||||||||| |||||||||||||||
Sbjct: 250 tggctctatgcttaatt---ttaacctgacttgcttcttttctggacagagaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space: 191361
Effective search space used: 191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no049_l08.g1 MSMg01no049_l08.g1 CHROMAT_FILE:
MSMg01no049_l08.g1 PHD_FILE: MSMg01no049_l08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:12:00 2005
(330 letters)
>mm_chr1_183017090_183017818
Length = 729
Score = 514 bits (266), Expect = e-150
Identities = 315/332 (94%), Gaps = 3/332 (0%)
Strand = Plus / Plus
Query: 1 tttatttaagatagagagcaggctcttgtcacaaagaactcttgtcccaaaactcatgga 60
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 tttatttaagatagagagaaggctcttgtcacaaagaactcttgtcccaaaattcatgga 260
Query: 61 ttcagcatttataaaggcaaaagccataaggacattagtcacagaaaatcctgcctgtgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 ttcagcatttataaaggcaaaagccataaggacattagtcacagaaaatcctgaatgtgc 320
Query: 121 tgccactcagtggtaaggggttggggctggctgaaagagcaccctgacaaaatatagtaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 cgccactcagtggtaaggggttggggctggctgaaagagcaccctgacaaaatagagtaa 380
Query: 181 gatcattggcaggacagcaaagcaacctgaaattagagtccaacatgccacttttccacg 240
||||||||||||||||||||||||| |||||||| ||||||||| ||||||||| ||||
Sbjct: 381 gatcattggcaggacagcaaagcaaactgaaatt-gagtccaacgtgccactttcccaca 439
Query: 241 tctgggaactacttctgggcactcccacataggtacatttctttcttttaaagattttat 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 440 tctgggtactacttctgggcactcccacataggtacatttctttcttttaaagatttcat 499
Query: 301 tcatgtatatgagcag--tgttgctgtcttca 330
| ||||||||||| || ||||||||||||||
Sbjct: 500 tgatgtatatgagtagagtgttgctgtcttca 531
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 729
Length adjustment: 9
Effective length of query: 321
Effective length of database: 720
Effective search space: 231120
Effective search space used: 231120
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
