Query= MSMg01no049_l20.b1 MSMg01no049_l20.b1 CHROMAT_FILE:
MSMg01no049_l20.b1 PHD_FILE: MSMg01no049_l20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:12:04 2005
(765 letters)
>mm_chr1_175348003_175349167
Length = 1165
Score = 1421 bits (735), Expect = 0.0
Identities = 747/751 (99%), Gaps = 1/751 (0%)
Strand = Plus / Plus
Query: 16 ggaattc-ctttgaagaccaggctggtttcgaattcagaaatctgcctgactctgcctcc 74
||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 215 ggaattcactttgaagaccaggctggcctcgaattcagaaatctgcctgactctgcctcc 274
Query: 75 cgagtgctgggattaaaggtgtgcgcttcctcacactggcaccctacttgggatattttc 134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 cgagtgctgggattaaaggtgtgcgcttcctcacactggcaccctacttgggatattttc 334
Query: 135 ttagcttcgagttgaattccttccattcccttagataactccattcattacacatttcaa 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 ttagcttcgagttgaattccttccattcccttagataactccattcattacacatttcaa 394
Query: 195 tagatgctcagtagacgtttgaaatcacacaaaacaaagacttgtactttgtcctattcc 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tagatgctcagtagacgtttgaaatcacacaaaacaaagacttgtactttgtcctattcc 454
Query: 255 tgtagccaatgaggttaagtataatttacacttagtgtagtaagaatttgccaacaacaa 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 tgtagccaatgaggttaagtataatttacacttagtgtagtaagaatttgccaacaacaa 514
Query: 315 ctaatactaaagtacgataacaaaagcgatgcaaacggcagtgatgaatgcattttcggt 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 ctaatactaaagtacgataacaaaagcgatgcaaacggcagtgatgaatgcattttcggt 574
Query: 375 tttgttcagtaagtcaacataaagacaaagcaatagtgaagggacaaatcttcatcaagt 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 tttgttcagtaagtcaacataaagacaaagcaatagtgaagggacaaatcttcatcaagt 634
Query: 435 gagagtggggacaggctggggaaggccctttggggacactcctttgaagtttccaataga 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 gagagtggggacaggctggggaaggccctttggggacactcctttgaagtttccaataga 694
Query: 495 gagagagagagtcctgggcagagaagagtgagggtgagaattccaacgagaagaaccaat 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 gagagagagagtcctgggcagagaagagtgagggtgagaattccaacgagaagaaccaat 754
Query: 555 acctacagttagaaaaaaacagcattaaacgggatgcttacgatactcagcaaaaaccaa 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 acctacagttagaaaaaaacagcattaaacgggatgcttacgatactcagcaaaaaccaa 814
Query: 615 accaggaagttaaggcagttaagtttctctccatggctgaccttcacactgtagacctgt 674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 accaggaagttaaggcagttaagtttctctccatggctgaccttcacactgtagacctgt 874
Query: 675 atacatcacagttaaaacatgttggaaatgattgacctagtttttaagaaggtcatattt 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 atacatcacagttaaaacatgttggaaatgattgacctagtttttaagaaggtcatattt 934
Query: 735 ttattcctgagctgttttgtcctccttgtaa 765
|||||| ||||||||||||||||||||||||
Sbjct: 935 ttattcttgagctgttttgtcctccttgtaa 965
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 765
Length of database: 1165
Length adjustment: 10
Effective length of query: 755
Effective length of database: 1155
Effective search space: 872025
Effective search space used: 872025
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no049_l20.g1 MSMg01no049_l20.g1 CHROMAT_FILE:
MSMg01no049_l20.g1 PHD_FILE: MSMg01no049_l20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:12:04 2005
(224 letters)
>mm_chr1_175363826_175364449
Length = 624
Score = 420 bits (217), Expect = e-122
Identities = 220/221 (99%)
Strand = Plus / Minus
Query: 1 cctaaggaggcaaagccattggaggaaaagaagcatctacacctcagtttaatacttgag 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 374 cctaaggaggcaaagccattggaggaaaagaagcatctaaacctcagtttaatacttgag 315
Query: 61 gcagggtagctataaatgataactgcggtgctatgcttatggcgttgatgacagaaggaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 gcagggtagctataaatgataactgcggtgctatgcttatggcgttgatgacagaaggaa 255
Query: 121 ccaagctgagaagaaacgatgatagagaagaggctctgggtgtcattcacactatgtata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 ccaagctgagaagaaacgatgatagagaagaggctctgggtgtcattcacactatgtata 195
Query: 181 tatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgt 221
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 tatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgt 154
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 224
Length of database: 624
Length adjustment: 9
Effective length of query: 215
Effective length of database: 615
Effective search space: 132225
Effective search space used: 132225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
