Query= MSMg01no049_n05.b1 MSMg01no049_n05.b1 CHROMAT_FILE:
MSMg01no049_n05.b1 PHD_FILE: MSMg01no049_n05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:12:14 2005
(558 letters)
>mm_chr1_76681543_76682499
Length = 957
Score = 1038 bits (537), Expect = 0.0
Identities = 552/557 (99%), Gaps = 1/557 (0%)
Strand = Plus / Plus
Query: 1 tctctgaaacagccagcctcactacctcgcccagccatctggctacctttagacaaacaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctctgaaacagccagcctcactacctcgcccagccatctggctacctttagacaaacaa 260
Query: 61 atgcgaccaactaagaccaaaaaaacctttgagcaacttgccatccaagctaaccactgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgcgaccaactaagaccaaaaaaacctttgagcaacttgccatccaagctaaccactgt 320
Query: 121 aaatgtatgaatcagcaatagaagaggaactaagacaatattaagagctatatccttatc 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaatgtatgaaccagcaatagaagaggaactaagacaatattaagagctatatccttatc 380
Query: 181 tatctacatgcagcctacacaaagctgaacttacctgtgatctgaatcattctgggccca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatctacatgcagcctacacaaagctgaacttacctgtgatctgaatcattctgggccca 440
Query: 241 actccttacaagaggcaggagagatagagtgagagaagtaattaaggtgatagaagcaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actccttacaagaggcaggagagatagagtgagagaagtaattaaggtgatagaagcaaa 500
Query: 301 aacagagtgatggccttgttgagaacaggccttaggacaaggaatacacatgacttcaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aacagagtgatggccttgttgagaacaggccttaggacaaggaatacacatgacttcaag 560
Query: 361 gactcataagaggcaggaaatagaatccttacttgaggttccagaaagaacacagctgtt 420
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 561 gagtcataagaggcaggaaatagaatccttacttgaggttccagaaagaatacagctgtt 620
Query: 421 cccaaagcttgcatttgggacttatgtttgactccggaaagtatcatgtgataaagtcat 480
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cccaaagcttgaatttgggacttatgtttgactccggaaagtatcatgtgataaagtcat 680
Query: 481 attgccatagcccattaagcttgtgacaaatcgttagaatggtaattgggaacccatacc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 attgccatagcccattaagcttgtgacaaatcgttagaatggtaattgggaacccatacc 740
Query: 541 ctctcattcttctgtca 557
||||||||||||||||
Sbjct: 741 -tctcattcttctgtca 756
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 957
Length adjustment: 10
Effective length of query: 548
Effective length of database: 947
Effective search space: 518956
Effective search space used: 518956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no049_n05.g1 MSMg01no049_n05.g1 CHROMAT_FILE:
MSMg01no049_n05.g1 PHD_FILE: MSMg01no049_n05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:12:14 2005
(338 letters)
>mm_chr1_76826147_76826884
Length = 738
Score = 557 bits (288), Expect = e-163
Identities = 309/316 (97%), Gaps = 1/316 (0%)
Strand = Plus / Minus
Query: 1 aattagtcatctcgaaaggtaactgagggtactcttggcctcagggttgcaaaagtagtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 aattagtcatctcgaaaggtaactgagggtactcttggcctcagggttgcaaaagtagtt 256
Query: 61 gtgtgtgcaaacggattactgaactaattttggaaaataataacaatagctcttgctaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 gtgtgtgcaaacggattactgaactaattttggaaaataataacaatagctcttgctaac 196
Query: 121 atttattgaattctaactatgaatcatgcaatcaaaattaatttatgttgtttcatttcc 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 195 atttattgaattctaactatgaatcatgcaatcaaaattaatttatgttgtttcatttac 136
Query: 181 cagtataactttatgtgttgggaactgttattgacattttatagctaagggggaaaactc 240
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 135 cagtataactttatgtgttgggaactgtttttgacattttatagttaagggggaaaactc 76
Query: 241 tagtctagagtattcaaacaacttcacttacacaccgtcatagaaaccaaccgcagcaaa 300
|||||||||||||||||||||||| ||||||||| || |||||||||||| |||||||||
Sbjct: 75 tagtctagagtattcaaacaactt-acttacacaacgccatagaaaccaagcgcagcaaa 17
Query: 301 gctgagatttgagtca 316
||||||||||||||||
Sbjct: 16 gctgagatttgagtca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 738
Length adjustment: 9
Effective length of query: 329
Effective length of database: 729
Effective search space: 239841
Effective search space used: 239841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
