BAC Information

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BAC

Clone NameMSMg01-049P22
Chromosome1 (Build37)
Map Location 5,589,256 - 5,589,430
singlet/doubletsinglet
Overlap geneOprk1
Upstream geneLOC664853, LOC619596, EG619980, LOC100039121, LOC620009, Mrpl15, Lypla1, Tcea1, LOC619829, Rgs20, Atp6v1h, EG636659
Downstream geneNpbwr1, 4732440D04Rik, Rb1cc1, EG620393, LOC100039302, LOC664946
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-049P22.T7 (MSMg01no049_p22.b1)MSMg01-049P22.TJ (MSMg01no049_p22.g1)
ACCAG279230AG279231
length1,2031,239
length of high quality
(start - end)
282 (135 - 416)175 (264 - 438)
definitionCHROMAT_FILE: MSMg01no049_p22.b1 PHD_FILE: MSMg01no049_p22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:12:35 2005CHROMAT_FILE: MSMg01no049_p22.g1 PHD_FILE: MSMg01no049_p22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:12:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCTTTTTCATTGGGCGCATCGACTACTAAGGGAGAGGATCCGCGCAAT
TCTTTGTTTAGCTCTGTGCCTTTTTATTTATACGGTTATTTGATTTTCTG
GAGACCAGCTTCTTGAATTCTTTGTACTTATTGAAAATTAGTCCCCTATT
GGATTAAGGATTGGTGAAAATCTTGTACCAATCTGTTGGTGGCCTTTTTG
TCTTATTGACAGTGTCCTTTGCCTTATACAAGCTTTGCAGTTTTGTGAGG
TTCCATTTGTCGATTCTCAATTTTACAGCACAAGCCATTGTTATTCTGTT
AAGGAGATCTTCCCCTGTACCCATACCTTCGAGGATTTTCCCTACTTTTC
CTCTGCAAGTTTCGGAGTCTCTGGTTTTATGTGTAGCCTCAAACCAATTT
CTCTTATGAACATCAATGCAAAAATACTCAATAAAATCCTTGCCAACCCA
GTCCAAAAACACATCCAAACAATCATCATTCATGACCAAGTAGGCTTCAT
CCCAGGGATGCAGGTATGGTTTAATATACCGAAATCCATCACCATAATCC
ACTATATAAACAAACCCCAAGACAAAAACCACATGATCATCTTGTCAGAT
TCTGAGAAAGCATTTGACAAAATCCAACCCCCCTTCATGATAAACATCTT
GGAAAGTTCAGGAATTCAAGGTCCATACCAAAACATAATACAAGCAATAT
ACAGTAAATCATTAGCTAACATCACACTAAATGAACAGAAACTTGAAGTA
ATCCCATTAAAATCAGGTACTAGACAAGGCTTGCCCCTTTTCTCCCTACC
CATCCAATATAGTACTAAAAGTCCTATTCAGAACATTTTACCAACAAAAG
GAGATCCAGGGGATCCTATTTGGAAAGGAAAAATTTCCCCAATTTCTTAC
GTAACTGTGATGTTCCGGTAGGATATTATTCTGTGATGAGGTATCCTAAT
TCCCCGAAAAAACACCCTGTATATGCTCTCCCTGATAAGTGGAATATTAA
CCTTAAAAGTTTTCAATGCCCATTATACCATTTTCAAATACCCCCCTGAA
AATTCTGTAAATAAAGAATATACTTAACGTGGGGAATGCTTCTATAATTT
TTTTAAAATAGGGGTGTCCAAATCTCTCCTTTTAAAAATAAATCCCTAAA
ACTTTCTTGTGTGTTCTTCAAATTCTTTATAAACAAGTATCTTTCCTCAA
ATT
NTTTCCAAATGATGCGAGCCGCCGGCGCCGGCCGTTTAXXXXXXXXXXXX
XXXXXXXXXXXXXXXAGGCCCTTTATACGACCTGAACTTTTACTTTGGAA
ATGAATTGAACCCTTAACTATCATGAAACAACCAAACAGAGCAGTAAAAA
TATAATTCCTAAATCCATGAATGATTACAAATGAAACAATTGTGTGTTTT
TTTTTCCACTTTTAAACATGTAGTAGGGTGATGATAGTGCCAAAGCCTAC
ATACACAGAAGCCTGATTCTTGAAGTGCTCACTGAACTTGAAAGGACTGC
AAATTCAGAGCGAGAAGAGTATATGCCCTGGATTTCTTTTTATTTCTCTT
TTTCCCATATTTTCACAGAAACTTTTGATACAGTAAGGTTGAGGTTACCA
TCCTACTTTCTCACTTTGGAAACTAGTACCCTCAACATGTATATCTTAAC
CAACGATGTGGCAAACCAACTAGAAAATAACCGTCAATCATCTTGCCAGT
ATTTTCATGGGTCATAGGAACACACGTGTGTGTACATAAAACCTTTCACT
ATTCCTGGATCACATCATACTCATTATTCTTATGCCTGTCAGAAATGGAA
TCTAGAAAAATGATGGTGAATTGAGGATGCAAAGTCAATAAGGTTTTGAA
AATACCACCTAGCAATCCTATGCCTTACCTTTCTTTTCTCTCTCAATTAT
CAAAGACATATGTGGGCTCCCTTTTCCCTTCTTGCTTTAAGGTTATCCCT
TATTTAAATTTTTCTTTGTTGGTCAAGGTAACCTTCATGATCAGGCTCAT
AAGGTGGTTTGTCATTCCTTACCTTTTGAACATATGGGAACCTGCCCTTT
TCACTGTTGTTTAAATCACTTTACGGAGAAAGCTAAGAAATCGCTCTCCG
CTCCTTTAAACAAATTCCAATTCCCTGTTGTCATAATCCTTAGAAAACTT
TGGGTTTAAATTGAACCTATAATGGGGAAATTAAGATAGGTCTTGACTCG
TATACCAAATGTTAAAAAAAAGATTGTTTCCAAAAACTTTTTCCTTTTTT
TTAACTAAGGTTCCTAAACCTTTGTAAAAATAAATCTCTTGAATCTTTTA
AATACCCCCCCTCTTTTGGAAAGGTAATATTACATCGCTTATCCCATGTG
TCTTATTCACCTAATTTATCCCCCAAATAGTTCCCCTTCTTATTCAAAAA
TAAATATATTTTCACACAAACCCTCGTGTAACTACTAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no049_p22.g1 MSMg01no049_p22.g1 CHROMAT_FILE:
MSMg01no049_p22.g1 PHD_FILE: MSMg01no049_p22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:12:36 2005
         (175 letters)



>mm_chr1_5589056_5589630
          Length = 575

 Score =  267 bits (138), Expect = 3e-76
 Identities = 166/178 (93%), Gaps = 6/178 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgattcttgaagtgctcactgaacttgaaaggactgcaaattcagagcgagaagagtata 60
           |||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||
Sbjct: 201 tgattcttgaagtgctcagtgaacttgaaaggactgtaaattctgagcgagaagagtata 260

                                                                       
Query: 61  tgccctggatttctttttatttctctttttcccatattttcacagaaacttttgatacag 120
           |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct: 261 tgccctggatttctttttatttctctttttcccacattttcacagaagcttttgatacag 320

                                                                     
Query: 121 taaggttgaggttaccatcctac---tttctcactttggaaactagtaccctcaacat 175
           |||||||||||||||||||||||   ||   ||||||||||||||||| |||||||||
Sbjct: 321 taaggttgaggttaccatcctacaaatt---cactttggaaactagtagcctcaacat 375


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 175
Length of database: 575
Length adjustment: 8
Effective length of query: 167
Effective length of database: 567
Effective search space:    94689
Effective search space used:    94689
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)