BAC Information

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BAC

Clone NameMSMg01-050E05
Chromosome1 (Build37)
Map Location 145,101,414 - 145,102,100
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC545369
Downstream geneCdc73, B3galt2, LOC623138, Glrx2, Trove2, Uchl5, Rgs2, Rgs13, Rbm6-ps2, Rgs1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-050E05.T7 (MSMg01no050_e05.b1)MSMg01-050E05.TJ (MSMg01no050_e05.g1)
ACCAG279399AG279400
length1,1681,217
length of high quality
(start - end)
737 (32 - 768)690 (73 - 762)
definitionCHROMAT_FILE: MSMg01no050_e05.b1 PHD_FILE: MSMg01no050_e05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:48:20 2005CHROMAT_FILE: MSMg01no050_e05.g1 PHD_FILE: MSMg01no050_e05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:48:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTAACTCATTGGGCGCTATAGACTCCTAAGGGAGAGGATCCGCGGAAT
TCTTTGTTCAGTTCTGAGCCCCTTTTTTTAATGGGGTTATTTGATTTTCT
GGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTACCCTAT
CTGATTTGGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTTTT
GTCTTATTGACGGTGTCTTTTGCTTTGCAGAAGCTTTGCAATTTTATGAG
GTAATGCAAACAATTGTGAATATAAAGAAGAATTTAATTTAAAAAATATA
TAAAGAAAAATCATAATAAAATAAAACTCAGAAAACTGAGGAAGTCACAA
TAGAGAGACATAAGCAAAGAAAGTGAGGGAGAGGAAGAGAGAAAGAAAAA
TCATAGAAAAGTCTCTCAAATAGAGTGGACCAATTGTAAAATAAGTTATT
AGATCTCTAAGACCATATGGAGGAAATGGATCACTCAAAGAAAATGTTAG
ATCTAAAAGAACCTAGGAAAGGAACATGCTGTGAATCTAGGACATTATTT
TTTTAAAAAAACATGAATAATAGGTATACAAGAAGAAGAAACCCAGGCCA
AAGACACAAAAGGAATTTTCAACAAAATAATAGAAGAAATTTTCCCACAT
CAAGGAATGAGATCTACTAAAGTGCAAGAGACATAGAGACATAGAACCAG
AAATTAATTTCTCTCATCATACAACTTAATCAAAATACTAAATGTACAAA
ACAAAGTATAACAAACTTAAGAAGAGAGAAACATCCGCCCATATATAAAG
ACAGGTCTATCCCAACAATACCTAACTTCTACTTGTTTCCGCTTTCATTT
TCTTTGAGACACCCCGTTATTATCTTCTCTGGCTATCCTGGAAGTCCCAA
TGTCAAACATCCTGGCTTCACCCTCAAAGATTCCCTTTCCCCTATTTCTA
ATATTATCCGAATTTTTCACAGTAACTTAGAAACCTAAAACCGTTTTGAT
TGGTGAGCTTTAAGTTAGGAAGAAACCCGAAACACCCTCCAAAAGGCTTT
ACTCCGGTGAAACTTTTCGGTTTTTACCCAAGTAAAAAAGAAAAAAGTTT
TTTACATTCAAAAAGTGATTTTTGTGTACCTTAAGTTCCGCCAAACCCTA
TTTTCTCAGAAATATTTT
TTTTTGGTATGATGTGAGCCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCCTTTCCCGAATTTTATTTTTCAGTGTT
GTGAGCATGGAGATGCCATGAAGCTTCAGGGAGTGGCAGCGTCCTCATTT
TCTAAATGAGGGGCTCATATAAAGAAGTTCATAGTGGTCTTTTTATAGTT
GCCTCTGCCTCTACCATGAGTAGGGACTGTGAAGTAGAAGGGGATATAGT
CTTTCAAGTTGAGTGATACTTGCTTGTGGATTTGTGAACATTGGTCAAGA
GTCTGCCAGTAGAACAAGAGTATGTGGGTATGAATTCTGATTATGTCACT
ACTACTCTTTGTGGGAATAGCTTGATTTTGCTGATCTTTAACTTTCTTTC
ATAGAACGGGTAGAGATTGAATCTTACTAGACTGGTAGAGGATAAGGTGA
GTCAGCATGGACAAAGACTTTGAGTAAGGACTGATATACAGCTGACCTCA
ATGAATTTTTTACTGTTATTAAATGTAAGCATTCAGAAATCATGCTAGGT
ATTAATATAGAAGACTGCGTTGGATTCATAAGACATGAAAGAAAATTGAG
GCTAGAACTCTGGTCTACCACACCTGCCTTTTTATGGTCTGGAAACCAGG
AAGTTACTGGCCAGTGTCACAATTGAGACTCCTTGTCCATGCAGAACATT
GTGTTTGGAATATCTACCAGCAAGAGGGTAAAGCACTCTGACTTACGTAT
TGGCAGATTCTACGAATATGCTGCTGGGTGGGATTTTCTTTGCATCTGGG
CCCTGGACCCTTTATTTATATCATATATTATATATTTCCTTGATTACTTA
TAATCCTATGAGATAAATTATACTTATTTAATATTATTCATATTTCCTTA
TATATTAGGATAACCCCCCTACTGGTACAAAGCCCATGGCTGTGGTTTCC
CATAATTATTAGGAATGTTCTTTCAACCCCCCCATTATATGTTCCCCAAA
TTTCATTATAAAGGGTAAACATTACCTAATAATATTGTTTTAACAATTTC
AATTAACAGGGTATTCCTTCACCCCCTTTATTTAAATAAAGTGGCTGAAA
ATATCTATACACCCCTGGCCCTCCATAGGCCTTTAAAAATTTTTTCCGAG
TCTCTTCTCTTAGATGGGCTTTCCTGTTTTTTAAGAGTCGTATAAAAACC
CCTTTTTGCTTATCACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no050_e05.g1 MSMg01no050_e05.g1 CHROMAT_FILE:
MSMg01no050_e05.g1 PHD_FILE: MSMg01no050_e05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:48:20 2005
         (690 letters)



>mm_chr1_145101213_145102303
          Length = 1091

 Score = 1236 bits (639), Expect = 0.0
 Identities = 675/687 (98%), Gaps = 1/687 (0%)
 Strand = Plus / Minus

                                                                       
Query: 2   ctttcccgaattttatttttcagtgttgtgagcatggagatgccatgaagcttcagggag 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 888 ctttcccgaattttatttttcagtgttgtgagcatggagatgccatgaagcttcagggag 829

                                                                       
Query: 62  tggcagcgtcctcattttctaaatgaggggctcatataaagaagttcatagtggtctttt 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 tggcagcgtcctcattttctaaatgaggggctcatataaagaagttcatagtggtctttt 769

                                                                       
Query: 122 tatagttgcctctgcctctaccatgagtagggactgtgaagtagaaggggatatagtctt 181
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 tatagctgcctctgcctctaccatgagtagggactgtgaagtagaaggggatatagtctt 709

                                                                       
Query: 182 tcaagttgagtgatacttgcttgtggatttgtgaacattggtcaagagtctgccagtaga 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 tcaagttgagtgatacttgcttgtggatttgtgaacattggtcaagagtctgccagtaga 649

                                                                       
Query: 242 acaagagtatgtgggtatgaattctgattatgtcactactactctttgtgggaatagctt 301
           |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 648 acaagagtatgtggttatgaattctgattatgtcactactactctttgtgggaataactt 589

                                                                       
Query: 302 gattttgctgatctttaactttctttcatagaacgggtagagattgaatcttactagact 361
           ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 588 gattttgttgatctttaactttctttcatagaaagggtagagattgaatcttactagact 529

                                                                       
Query: 362 ggtagaggataaggtgagtcagcatggacaaagactttgagtaaggactgatatacagct 421
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 528 ggtagaggataaggtgagtcagcatggacaaagactttgagtaaggcctgatatacagct 469

                                                                       
Query: 422 gacctcaatgaattttttactgttattaaatgtaagcattcagaaatcatgctaggtatt 481
           ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 468 gacctcagtgaattttttactgttattaagtgtaagcattcagaaatcatgctaggtatt 409

                                                                       
Query: 482 aatatagaagactgcgttggattcataagacatgaaagaaaattgaggctagaactctgg 541
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 aatatagaagactgtgttggattcataagacatgaaagaaaattgaggctagaactctgg 349

                                                                       
Query: 542 tctaccacacctgccttttt-atggtctggaaaccaggaagttactggccagtgtcacaa 600
           |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 348 tctaccacacatgccttttttatggtctggaaaccaggaagttactggccagtgtcacaa 289

                                                                       
Query: 601 ttgagactccttgtccatgcagaacattgtgtttggaatatctaccagcaagagggtaaa 660
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 ttgagactcattgtccatgcagaacattgtgtttggaatatctaccagcaagagggtaaa 229

                                      
Query: 661 gcactctgacttacgtattggcagatt 687
           |||||||||||||||||||||||||||
Sbjct: 228 gcactctgacttacgtattggcagatt 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1091
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1081
Effective search space:   735080
Effective search space used:   735080
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)