BAC Information

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BAC

Clone NameMSMg01-050F22
Chromosome1 (Build37)
Map Location 49,860,186 - 49,860,826
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666909, 2900045O20Rik, LOC666924, C230029F24Rik, LOC627430, LOC100041981
Downstream geneEG666962, EG666970, LOC100041993
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-050F22.T7 (MSMg01no050_f22.b1)MSMg01-050F22.TJ (MSMg01no050_f22.g1)
ACCAG279470AG279471
length1,1701,246
length of high quality
(start - end)
642 (85 - 726)599 (68 - 666)
definitionCHROMAT_FILE: MSMg01no050_f22.b1 PHD_FILE: MSMg01no050_f22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:48:35 2005CHROMAT_FILE: MSMg01no050_f22.g1 PHD_FILE: MSMg01no050_f22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:48:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNCCACAGTGGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAAT
TCTTTAGACAGCATCAGAACCTTTGAAGATATCATTAGGTACAAGGAACT
TTAAGATGAACATGTTTTTCTGGATTATTGGCGGAGGAGACCCAAATACA
ACCACATGAGGTATAGGAATATAAACATTTTTTTTTTCTGTCTCCAGGTG
GATCAGAGGGTGATGTGAGAATGGATGAAAGATCAGGCACAGGTGGTGTT
TATGGATTTGAAACAGTGAATCACAGCTTGGATAATACAACTTTCTTACA
GGGTCTAGGGAATAGTTTGGCCCCCAAATGAGTCTCTGAAAACATCTGTT
CTGTTTACTCAGAGAAGCTACATCAGTGCTTTGCCCTACCATATACTAAA
TTCATGTTTATATTATTAATGTGTTGACAAGAAACTTAGAACTGTGTCCT
GCCTCATGAAAATAACAACTGTGCAAGAAGAGAATGTGTATTTGGCTCAA
GAAATTTCCATGAAGATTTTGAAAATGGGGCCAGTTTTATCTGTTTAGAA
TAAGATGTGAACAGAAACAAATACATTTCTGTTCAGGAACAAATTGTCAC
TAAATGAAAAGCATTTAGAAATGCTCTTCTCAACCACATTAGCAAGTGCA
GTAGAGTTTCCCTGACTATACAGCAAATGCCAAGGAGAAATCCAGACTTG
TGGGAATGTACTGTAACCTTTGATGGCTGTCTGAGAAAAGAGGAAAGCAC
CACTGGTCATTCATACATAACCCTCTGAGGAGTATGAAGATGTGACTGAC
ATCCTCTCAAAAGAGAGTAGACCCAGCAAGTTTCCGGCCTGCCTTTTCAT
CCTCTCCTCTGGGTCCTCTTTTATTTATACTACTGCCTATTCCTCGAAGG
CTTTTCCTTACCCCTGCTTTATTAACTTTTATGGATTTGAAAAAAATACT
CTCCAAATGTGTTCTGTGCCTAAATACTATCCCCCCTCTCTACTCAGCTT
TTTTATCTCCCTATTATCTTGGCTCTTCATGCTCTCCTTCCCTCTTCTTC
GTCTCGACCCATCCCCCGATGGAATCCTCCTACTTCTTCTTTCTTTATTT
CATCTTCCACTCTTCGTTCTTCTTCTCTCCCCCTACTTTCCCATCCCCCC
TTCCTTTCTTTCCTTCATCC
NNTTGAACACGTGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCCTCTTTCCTGAACTCCTCATCCTAGAGTTCGA
ACCCTCCCAACTAAAGACTGTTCCAAGAACATTTTTGAGATAAGGGCCTC
CTGGAACAACCTCAGAATGAACCGGGTACATTGCCAAATAATAGGACATG
ACCCCTTAGTTACATAGAATTCCCTTGGCAGAACCCCTTGTCCCTTGGCA
GAACCCCTTAGTTATGCAAACTTGTACTTTCCCTGCCTCGCTCTCCCCCC
TTGAGTTTTTCCTATATAAGCCTGTGAGAAATTTGGCTCGAGGTCGATTC
TCCTCTACACCATACTAGGTGTATGAGTTTCGACCCCAGAGCTCTGGTCT
ATGTGCTTTCTTGCTGTTGCTTTATTAAATCTTGCCCTCAACATTTTGAG
TTCGGTCTCAGTGTCTTCTTGGGTCCGCGGCTGTCCCGAGGCTTGAGTGA
GGGTCTCCCTTCGGGGGTCTTTCAGACTGACCACAGGGACCCCAGTGGAT
GACTTAGGGGAAGTACTGAAGGAATTGAAGAGGCCTTAACTGCTATTAAT
GTGAGCGGAGACCCTTGGTCTTGTGAAGGCCTGATGCTCCAGTGTAGAGG
AATGCTACAACAGTAATGCAGGAGTGGGTAGGCGGGTGGTGCAGCCGCCT
CATTGAATTACTGTCACGCATCCTATAGGATAGCGTTTTCTTTTTTCTTG
TTCCTTTATCTCCTCTCTATTTTTTTCCTTTCTCTCTCTCTTCCTTCCTT
TTTTTTTTTTTTTTTTCTCTTATTTTCACTTTCTCTTTTTTTCTCTTCTC
TTATTCCTTTTTCTTTCTTCTCTTCTCTCTTTTTTTTCTTTTTTTTTCTT
TCTTTTCCTTACTCTTCTTCCTCTTCTTCTCCTCTTTTTTTTTTTTATTT
TCCTTTTATTTTCTTTTCCCTCTATTTCTCCTTTCCTTATCCTTCTTCTC
CTTCTCTCATTCCTATCCTTCTCTTTTCTCCCATCTTCTCTTTTATTCCT
CTCTCTCCTTTCCTATTTTCTATTCCTCTCTTTCTTCCCCTTCTTATTCT
TTCCTTTTTCTATCCTCTCTTTCTCTTCTTTTTCTTCCTTCTCTTCCTTT
TTCGCTTATTCTTCCTTTCTTCCCCTATCACTCTCTTTTTTACTCATCTC
ACTTTCTATACCCACCCCTTATCTTCTCTTTATCCTACTCTCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no050_f22.b1 MSMg01no050_f22.b1 CHROMAT_FILE:
MSMg01no050_f22.b1 PHD_FILE: MSMg01no050_f22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:48:35 2005
         (642 letters)



>mm_chr1_49859986_49861026
          Length = 1041

 Score = 1110 bits (574), Expect = 0.0
 Identities = 625/642 (97%), Gaps = 1/642 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaggtacaaggaactttaagatgaacatgtttttctggattattggcggaggagaccca 60
           |||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||
Sbjct: 201 ttaggtacaaggaactttaagatgaagaagtttttctggattattggtggaggagaccca 260

                                                                       
Query: 61  aatacaaccacatgaggtataggaatataaacattttttttttctgtctccaggtggatc 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 aatacaaccacatgaggtataggaatataaac-ttttttttttctgtctccaggtggatc 319

                                                                       
Query: 121 agagggtgatgtgagaatggatgaaagatcaggcacaggtggtgtttatggatttgaaac 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 agaggatgatgtgagaatggatgaaagatcaggcacaggtggtgtttatggatttgaaac 379

                                                                       
Query: 181 agtgaatcacagcttggataatacaactttcttacagggtctagggaatagtttggcccc 240
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 agtgagtcacagcttggataatacaactttcttacagggtctagggaatagtttggcccc 439

                                                                       
Query: 241 caaatgagtctctgaaaacatctgttctgtttactcagagaagctacatcagtgctttgc 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 440 aaaatgagtctctgaaaacatctgttctgtttactcagagaagctacatcagtgatttgc 499

                                                                       
Query: 301 cctaccatatactaaattcatgtttatattattaatgtgttgacaagaaacttagaactg 360
           |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||
Sbjct: 500 cctaccatatactaaattcatgtttatgctattaatgtgttgacaagaaacttagaactg 559

                                                                       
Query: 361 tgtcctgcctcatgaaaataacaactgtgcaagaagagaatgtgtatttggctcaagaaa 420
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tgtcttgcctcatgaaaataacaactgtgcaagaagagaatgtgtatttggctcaagaaa 619

                                                                       
Query: 421 tttccatgaagattttgaaaatggggccagttttatctgtttagaataagatgtgaacag 480
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 620 tttccatgaagattttgaaaatggggccagttttatctgcttagaataagatgtgaacag 679

                                                                       
Query: 481 aaacaaatacatttctgttcaggaacaaattgtcactaaatgaaaagcatttagaaatgc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aaacaaatacatttctgttcaggaacaaattgtcactaaatgaaaagcatttagaaatgc 739

                                                                       
Query: 541 tcttctcaaccacattagcaagtgcagtagagtttccctgactatacagcaaatgccaag 600
           |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 740 tcttctcaaccacattagcaagtgcagtagagttcccctgactataaagcaaatgccaag 799

                                                     
Query: 601 gagaaatccagacttgtgggaatgtactgtaacctttgatgg 642
           ||||||||||||||||||||||||| | ||||| ||||||||
Sbjct: 800 gagaaatccagacttgtgggaatgtgcagtaacttttgatgg 841


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1041
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1031
Effective search space:   651592
Effective search space used:   651592
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)