Query= MSMg01no050_h16.b1 MSMg01no050_h16.b1 CHROMAT_FILE:
MSMg01no050_h16.b1 PHD_FILE: MSMg01no050_h16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:48:51 2005
(689 letters)
>mm_chr1_76816691_76817777
Length = 1087
Score = 1263 bits (653), Expect = 0.0
Identities = 680/689 (98%), Gaps = 2/689 (0%)
Strand = Plus / Plus
Query: 1 gcaagataccaacaaagcttctagattataagtcgtgtggttaagatgcaagaatacagg 60
||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||
Sbjct: 201 gcaagataccaacaaagcttctaaattataagtcg-g-ggttaagatgcaagaatacagg 258
Query: 61 gagacatctggagattctggaaagtagcataaatctttataaagatgtattcaaattcta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gagacatctggagattctggaaagtagcataaatctttataaagatgtattcaaattcta 318
Query: 121 tagtgtataatcttatcaaaaagattaagtgcaaagctactatgctagctttcttcatgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tagtgtataatcttatcaaaaagattaagtgcaaagctactatgctagctttcttcatgg 378
Query: 181 gtgagctccatctaataaacacaaataataattgatatttaactttgaggtcatatctag 240
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 379 gtgagctccatctaataaacacaaataataattggtatttaactttgaggtcatatctag 438
Query: 241 ctttgaagtgcttgagactgaggaagactgagagatagcaaaccagagatttactgtgtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ctttgaagtgcttgagactgaggaagactgagagatagcaaaccagagatttactgtgtg 498
Query: 301 ggctgaactacagagataattccatagtatgtgatttcaccagtaggaagtaatatctgt 360
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 499 ggctgaactacagagataattccttagtatgtgatttcaccagtaggaagtaatatctgt 558
Query: 361 aacaaaaggcaggagttgaactgtgaataccttataggaagcattaggtaaactcagggc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 aacaaaaggcaggagttgaactgtgaataccttataggaagcattaggtaaactcagggc 618
Query: 421 agagtccctgggttcagtggtactaagtaaatacaaaagcacctgtgtttatataaacgc 480
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 619 agagtccctgggttcagtggtactaagtaaatacaaaagcacttgtgtttatataaacgc 678
Query: 481 acttgccattcacttgagcaaagtttatttctttggcaatacaccaagggtcacaacttg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 acttgccattcacttgagcaaagtttatttctttggcaatacaccaagggtcacaacttg 738
Query: 541 gcttcccttggtttaggatcaagttagagtttgtattaaatatgtgctaaacctaaatat 600
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 gcttcacttggtttaggatcaagttagagtttgtattaaatatgtgctaaacctaaatat 798
Query: 601 tacgtttaatactacattgaaaatagcttaatactacctttaaaacaattcaaaatacaa 660
|| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 799 taggtttaatactacattgaaaatagcttaatactacatttaaaacaattcaaaatacaa 858
Query: 661 atgtaattcccgttattttgttattccac 689
|||||||||||||||||||||||||||||
Sbjct: 859 atgtaattcccgttattttgttattccac 887
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1087
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1077
Effective search space: 731283
Effective search space used: 731283
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no050_h16.g1 MSMg01no050_h16.g1 CHROMAT_FILE:
MSMg01no050_h16.g1 PHD_FILE: MSMg01no050_h16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:48:51 2005
(516 letters)
>mm_chr1_76852235_76853149
Length = 915
Score = 975 bits (504), Expect = 0.0
Identities = 513/516 (99%), Gaps = 1/516 (0%)
Strand = Plus / Minus
Query: 1 aaagaacctgtccagccttcaatctatagaagcaggatagattgaaaatcaattcacaac 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 572 aaagaacctgtccagccttcaatctatagaagcaggagagattgaaaatcaattcacaac 513
Query: 61 tgtttgtctttccccagtgtctcttgcagtcaagtcaaggggaaaaaaaaatcaccttcc 120
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 512 tgtttgtctttccccagtgtctcttgcagtcaagtcaagggg-aaaaaaaatcaccttcc 454
Query: 121 ttgatgttttgtccatcaattgactttaggaaaaaatgaacctagcttgcctcacagacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 ttgatgttttgtccatcaattgactttaggaaaaaatgaacctagcttgcctcacagacc 394
Query: 181 atctccagaccttgtctttcagaggaccatttggatgactgaccagactccagctgtatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 atctccagaccttgtctttcagaggaccatttggatgactgaccagactccagctgtatt 334
Query: 241 ctatctcacctgcctagaagccagtctttggtaaccactaatggaggcattccttttatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 ctatctcacctgcctagaagccagtctttggtaaccactaatggaggcattccttttatt 274
Query: 301 tagttcatatgtttggaattcactgaatcaattaatccatacaactttgaaacccagggc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 tagttcatatgtttggaattcactgaatcaattaatccatacaactttgaaacccagggc 214
Query: 361 tgttttaagacagttttccatatgaagagacaggcacagtatgttaagtgacctgcccaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 tgttttaagacagttttccatatgaagagacaggcacagtatgttaagtgacctgcccaa 154
Query: 421 actctaagtgtttggtttgaataagaatggcatcctccctacataggctcatatatactt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 actctaagtgtttggtttgaataagaatggcatcctccctacataggctcatatatactt 94
Query: 481 ggatgattagatggcacggaatggcactatttgaga 516
|||||||||||||||| |||||||||||||||||||
Sbjct: 93 ggatgattagatggcagggaatggcactatttgaga 58
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 915
Length adjustment: 10
Effective length of query: 506
Effective length of database: 905
Effective search space: 457930
Effective search space used: 457930
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
