BAC Information

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BAC

Clone NameMSMg01-050I23
Chromosome1 (Build37)
Map Location 45,480,493 - 45,642,546
singlet/doubletdoublet
Overlap geneCol5a2, EG666799, LOC631429
Upstream geneTxn-ps1, Gulp1, LOC100041738, LOC100041752, LOC383640, Col3a1
Downstream geneLOC666814, EG666819, Wdr75, EG433297, LOC383644, Slc40a1, LOC670603, EG227054, LOC100042453, EG212225, Dnahc7b, LOC666855
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-050I23.T7 (MSMg01no050_i23.b1)MSMg01-050I23.TJ (MSMg01no050_i23.g1)
ACCAG279605AG279606
length1,1931,204
length of high quality
(start - end)
286 (106 - 391)472 (77 - 548)
definitionCHROMAT_FILE: MSMg01no050_i23.b1 PHD_FILE: MSMg01no050_i23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:49:02 2005CHROMAT_FILE: MSMg01no050_i23.g1 PHD_FILE: MSMg01no050_i23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:49:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,480,493 - 45,480,778)(45,642,075 - 45,642,546)
sequence
TATGCGCCTATAGACTCCTAAGGGAGAGGACCGCGGAATTCTAAAGTTTA
ATGTTCTGCCCTTTAAGTCATGAAACATGAGGCTTATTTGTGACCTTTAT
CTATGTTATGCCATATAAATCAATTATAAAAACACTTACTTGCTGTCCTT
GTAAACCCTGAGGTCCTCTTGGCCCAACAGGACCCTTAAAAACAAGTGGG
AAAAAGTTATATCGTATTTATGTCACATTATATTTATTCTTTTTAGATTT
GTTTATTTTATTTTAGGTGTATGAGTGTTTTGCTTTTATGTTTGCCTGTA
TACCACATGTGTGTCTATTGGCCTTGGATGCCATATGAGAATATTGTGCC
CTTTGGAACTGGACTTATGGATAGTTGTAAGCCACCACAACATTACTGAG
AATCAAACCTGGGATTTCTGAGACATCAGGTACTCTTACCAGCTGAGCCA
TCTCCTCATCTCCTTAACTTACATTTTTAAAACTGTGAATGTGTTTAGAA
CTTGGACTGTGATGACCGACTACAGGGCCATAACGACATGCCCAAACTTG
CTCTTCTGGGAGATTAAATTTGAGTGACAGTTGTGATAATTTCATTGTGA
ATCCTCTGCGTCATAGGAGAGATGACCACACCTATGCACACCCAGTTTTC
TTTAGGACAAGGGCCTGCACATGTGCAAATGGGTGGTTCTAAAAAAGTAA
ACCATCTGACAAAGGGAAAAATCTTGGCAGGTACATAGTTATCGAAGAGA
GCCAGCTTGATGCTTCAGCTCCACGGTGTCCCTAACTTAAATAACAATTC
TTCCGTTAAACAGTCTTATGAATATCCCCAGTCCTTTGCTTAGGTTATTT
TCCAATGCCCAGTTTTTAACCTTTATCTTGGGTATCTTGGGGTTCTCCGT
AAAACATCTTTTTTTTTCTTTTCACCAACTATATTGGTTTTAAAAGTAAT
AAAACCAGTTCCTTCCCTTTAATCCTACCCATTTAAAATGGGATGGCTCT
CTCAAAATCCCCCTAAAAATACCCGCGTATAGAAATAATAAAATATGGTA
AATACTTCTCTGGGAAAAAATTTTTTAAAATTTCCTGGTATAGGCAAGCG
CACTCACCCCTAAACTCTTCTAGATGTGTCCCTAGACAATCTCTTATTTA
CTAAGCGCCACTAAAATCCTCCATCTCTTTTAAATATGTTATA
AGAATGGTAGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCCCCTTTAAAGACCGTAGAGATATGCAAACTTGGACCAG
GGGACCCTAATCTCTGCCAAGGTGCCAGGTCAAATGTGCACTTAGCTTGA
GGGTGTGGTGGGAAATAGGATTTGTGACTAAAGTAGCAATTTTTGTTGTC
CTTAGAAAATTAGAAGTTATGTATTCCCCAATGGGGGGAAAGTATAGGAA
AAACTGGCAAAGTCCAATATAGCCATTGATGTAGAAGAGGGAAGATAGTT
GCAGAAGATCTTCTAAATTTCTGTACTTCTTTGAATTTCCAATAATGCAA
ATATAAATTAGTCAAGTAAAATCTGGACTGATGGCTAAGAAAGTCCTGCT
ACTGACAAAAAAGAACTTGGTTAAATTTCATTACTTGGTTACAAGAAAGG
GCTATGAACTCAATTTGCCTGGATTTTAATACCAGCTGCTTCTTTTATCA
ACCTATGATATTGGTAAGTAACTTGTCCTCTTGATGCTATACTCTTCTTC
AATTATTGGAGCGCTATAGAAGAACCTCCTAAGGCTTGTGGTACAAATTA
ATGTGTTTTACGATGTATACACAGCTGGGTCTGCCGCTGCCATGAAGTCC
AGGAGCATTGCATCATCCATGTTTGGAGCATGCTATTCATGAAATTCTAT
ATGGATGCTCATTGAAAAATATGGCTTAGGTCCTGCAATACTACCAAATT
ACGATTTTTTTTCTTTTCCCTTTTACATCCCATGCTCCTAAACCCATATG
CATACCTTAATAAACTATGCTTGGCCTTAATCTACTTTGGAAACCCTTAA
AAATTTGAGTAACCCCTTTACGGTTTTGCCATTAATTTTAATTTTTTCGC
TTTATTTTGACCCAAAATTTGATTTTAACCCTATGGGTAAAATCCCGGGT
AAAAAATATACCTTACCTTTTTAAAAACCTTTTAACAAATAAGTTCCTCT
CAAAAAATATTAATGGTGTAAAACAAATAATATTTTACAAATAATTTTCC
CGGTACAAACTTCCCAAATTCCCCCGGCTAATGGAAGTCTCCCGAGTACT
TTATTTTCCTGGAAACCACAAATAAAACCCCTCTTGACTCCCCTGGAGAA
TTCTCCCCTCCCCAAAAAGAAAAAAAATCCCTCACCGTGTGTTTCTCCTT
TGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no050_i23.b1 MSMg01no050_i23.b1 CHROMAT_FILE:
MSMg01no050_i23.b1 PHD_FILE: MSMg01no050_i23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:49:02 2005
         (286 letters)



>mm_chr1_45480293_45480978
          Length = 686

 Score =  507 bits (262), Expect = e-148
 Identities = 280/286 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttatgccatataaatcaattataaaaacacttacttgctgtccttgtaaaccctgaggtc 60
           |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttataccatataaattaattataaaaacacttacttgctgtccttgtaaaccctgaggtc 260

                                                                       
Query: 61  ctcttggcccaacaggacccttaaaaacaagtgggaaaaagttatatcgtatttatgtca 120
           ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 ctcttgggccaacaggacccttaaaaacaagtgggaaaaagttatatcatatttatgtca 320

                                                                       
Query: 121 cattatatttattctttttagatttgtttattttattttaggtgtatgagtgttttgctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cattatatttattctttttagatttgtttattttattttaggtgtatgagtgttttgctt 380

                                                                       
Query: 181 ttatgtttgcctgtataccacatgtgtgtctattggccttggatgccatatgagaatatt 240
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttatgtttgcctgtgcaccacatgtgtgtctattggccttggatgccatatgagaatatt 440

                                                         
Query: 241 gtgccctttggaactggacttatggatagttgtaagccaccacaac 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgccctttggaactggacttatggatagttgtaagccaccacaac 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no050_i23.g1 MSMg01no050_i23.g1 CHROMAT_FILE:
MSMg01no050_i23.g1 PHD_FILE: MSMg01no050_i23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:49:02 2005
         (472 letters)



>mm_chr1_45641988_45642859
          Length = 872

 Score =  874 bits (452), Expect = 0.0
 Identities = 467/472 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagagatatgcaaacttggaccaggggaccctaatctctgccaaggtgccaggtcaaatg 60
           ||||||||||||||||||||||||||||   ||||||||||||||||| |||||||||||
Sbjct: 559 tagagatatgcaaacttggaccaggggaaaataatctctgccaaggtgtcaggtcaaatg 500

                                                                       
Query: 61  tgcacttagcttgagggtgtggtgggaaataggatttgtgactaaagtagcaatttttgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tgcacttagcttgagggtgtggtgggaaataggatttgtgactaaagtagcaatttttgt 440

                                                                       
Query: 121 tgtccttagaaaattagaagttatgtattccccaatggggggaaagtataggaaaaactg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tgtccttagaaaattagaagttatgtattccccaatggggggaaagtataggaaaaactg 380

                                                                       
Query: 181 gcaaagtccaatatagccattgatgtagaagagggaagatagttgcagaagatcttctaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gcaaagtccaatatagccattgatgtagaagagggaagatagttgcagaagatcttctaa 320

                                                                       
Query: 241 atttctgtacttctttgaatttccaataatgcaaatataaattagtcaagtaaaatctgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 atttctgtacttctttgaatttccaataatgcaaatataaattagtcaagtaaaatctgg 260

                                                                       
Query: 301 actgatggctaagaaagtcctgctactgacaaaaaagaacttggttaaatttcattactt 360
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 259 actgatggctaagaaagtcctgctacagacaaaaaagaacttggttaaatttcattactt 200

                                                                       
Query: 361 ggttacaagaaagggctatgaactcaatttgcctggattttaataccagctgcttctttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 ggttacaagaaagggctatgaactcaatttgcctggattttaataccagctgcttctttt 140

                                                               
Query: 421 atcaacctatgatattggtaagtaacttgtcctcttgatgctatactcttct 472
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 atcaacctatgatattggtaagtaacttgtcctcttgatgctatactcttct 88


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space:   398244
Effective search space used:   398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)