BAC Information

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BAC

Clone NameMSMg01-050N03
Chromosome1 (Build37)
Map Location 68,170,099 - 68,170,833
singlet/doubletsinglet
Overlap geneErbb4
Upstream geneCps1, Kif22-ps
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-050N03.T7 (MSMg01no050_n03.b1)MSMg01-050N03.TJ (MSMg01no050_n03.g1)
ACCAG279779AG279780
length1,1731,331
length of high quality
(start - end)		751 (39 - 789)73 (73 - 145)
definitionCHROMAT_FILE: MSMg01no050_n03.b1 PHD_FILE: MSMg01no050_n03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:49:38 2005CHROMAT_FILE: MSMg01no050_n03.g1 PHD_FILE: MSMg01no050_n03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:49:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAATTCTNNNNNAAGCAGTGGGCGCTATAGACTCCTATAGGGAGAGGATC
CGCGGAATTCAGTAAGAAAATGGAAAAATAAAAAAATTAAACTTGATTAT
TTTAATGGCCCTTAACTTCAACTTCAATACCTGTGCTTGCATAAGATGGA
AAGAAAGGAAAGTTTCATACAAATGTATATAAGGAAAGGACAATGTGAAG
ACAGAGGAAGAAGACTAATAAGGCCATGAGCCAGAAAGGTTGGCAGCCGT
CAGAAGCTGGAAGAGAAGCAAACATGGATTCCCATCCCATGCCACCCACA
GCTTCTGGGGGAAGTAAATTCCTGCCAATATTTTGATTTCAAATCAGAGT
TTCTCATTTTAGATTGCTGGCTTCCAGAACCATAAGAAATTAAATCTCAT
TTGTTTCAAGCCATCAGCTTGTGGCAAATCGTTACAGCCCTCTATATAAA
ATTAACACAAGGATAAATTAATTGTTCACTGAATTTTTCTCGTATAAAGT
GCAGACCTTCTGTTATGCAGACATATAATAATACCAAGATAGAGTATGTG
TATCTTAACCTCACTACAACTAATCCTTTTCGCATGCTACAAAGATTAAG
TCTGCTTTGTTTGGAGGACAACAAATTTTGGTAACTGCCTTGTTTGGAGG
ACAACAAATCTTTGTGTGACCAACCTGTGAAGGCAGAATATTTATAGCCT
AGACTGGCTCTTTGTGTCAGTCTCCCTCAGAAGGCTGAAGAACTGAAGCT
CAATCCCCTTTTATATTTCAAACTCAAATGAAGCTTAGGGCTTGGCATAG
AGAGCCCTGATGGATGTTTGAAATAATTCTGAAACTGAACAACTGGGGGT
GGTGCCTGTCAAAGTCAACTGAAGAGAGACATGTCAAGTCTTAAAATGCA
GAGGTCAAAAGACCACGAATGCTGGAGAAGGTCCTGGATGCTGNAANGAA
CTGTGATTCTCTTGACCTTGTCTTGAAAACCAGACTTTCCATACCTAACC
CCTATCAAAAATGGGGATGGGGAAGCTTTCTCTCTTCTGACTAAAATGAA
ATGGCCGTTCCACTCCTCTCCTCCTGCACAAATTCCTTACGGTTCCAAAA
AAAAAATTTTTTATCCCCCTTTTTGGAAGGTTTTCCCCCCGGGGAAAAGG
AACCCTCCGGTGTTAACCCCGAC

NNNNAAACAGTGGAGCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTTCATCCTATTGGGTTGTGTTGTTCA
GGCTTGATATGAGGGTTTGTATGTTGTTTTGTTGGGTTTTGTTGCTGCCC
CCTGCACCTCTGATCTTTTCTGATNAANTCTGCCCAGGGAGTACACTAAG
GGGAGAGAAGAGATTGCCGCCACCTATAACACAATACCTACCACCCCCAC
ACCACAAACATACCTCCCCCACCAACACCTCCCCCTCACCACCAACAACC
CTACAACCCCACCACCACCTACAACACCCCACATCACAACTCCCCACACC
ACCCACCTCCACCCCACCAATCACTCCCCTCCCACACCCCACACTCACAC
CACCCTTTTTCTAATCCCCCACCCACCTCACCCACCCCCAAACTCAATAC
ACCCCCCCCTCTTTTTTCCCCCCCCCCCACAAACTCCACCTCACAATCAA
AACAAAAACATAGTAAACTATAAAACCCACACAATCACCTACCTCACCCT
CCCCCCCATCCCACATCCCACCAACCTCAACACCATCCACCTACCTCCTG
ACTCAAAACATACTCACCACAACCCCAACTCAACAACAAACCAAACTCTC
CTCTACCCACACATCACTTCAACCAACCCCCACCTCACCTCCCCACCACA
CTCACCCTCACACCCCCAAAACATCCCCCAACATACCCAACCACACACCC
ACCCCTCACCCCTACCACCCCCTACCACTCACACCCTCAACCTACACCCC
ATTCCACCAACACAACACACCCACATCTACCCCTCATAACCCCCCATCCT
TATATAATATAACCAACCACACAACCCAACCCACCCCTAACCTCCCCTCA
CCACCAAAAACCCCACCCTCCCCCACCACCCCACCACATCCTACCATACT
ATCCACACCACCCCCCAACCAACAAACTACCACCCTAAAACACACATCAA
CCCACCCTTTATATTAAAAAATAATATCCATTCATCACCCACAAACCACT
TACCCTCTCCTCAATAAACCACTCCCTCCCATCCCCACCCCTACAACCCT
CTCCATACCCTACACCACACCATAACAACAACTCCCACACACCCAGCCTC
ACCATTCCCCATCCCCCAACCATATAACTCAACCCACAAACACCTAATCC
CAAACCTCATTACACTCCTACACACACACCATCCCTCCACTCCTCTTCCT
CCCACACAACACACCCTCAACACACCCTCCAATCCACTAACTCCACATAT
ACTCCTCACCGCCCACCCACCCACCCACCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no050_n03.b1 MSMg01no050_n03.b1 CHROMAT_FILE:
MSMg01no050_n03.b1 PHD_FILE: MSMg01no050_n03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:49:38 2005
         (751 letters)



>mm_chr1_68169884_68171033
          Length = 1150

 Score = 1408 bits (728), Expect = 0.0
 Identities = 734/736 (99%), Gaps = 1/736 (0%)
 Strand = Plus / Plus

                                                                       
Query: 16  ggaattcagtaagaaaatggaaaaataaaaaaattaaacttgattattttaatggccctt 75
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 ggaattcagtaagaaaatggaaaaataaaaaaattaaacttgattattttaatggccctt 275

                                                                       
Query: 76  aacttcaacttcaatacctgtgcttgcataagatggaaagaaaggaaagtttcatacaaa 135
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aacttcaacttcaatacctgtgcttgcataagatggaaagaaaggaaagtttcatacaaa 335

                                                                       
Query: 136 tgtatataaggaaaggacaatgtgaagacagaggaagaagactaataaggccatgagcca 195
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtatataaggaaaggacaatgtgaagacagaggaagaagactaataaggccatgagcca 395

                                                                       
Query: 196 gaaaggttggcagccgtcagaagctggaagagaagcaaacatggattcccatcccatgcc 255
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 gaaaggttggcagccgtcagaagctggaagagaagcaaacatggattcccatcccatgcc 455

                                                                       
Query: 256 acccacagcttctgggggaagtaaattcctgccaatattttgatttcaaatcagagtttc 315
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 acccacagcttctgggggaagtaaattcctgccaatattttgatttcaaatcagagtttc 515

                                                                       
Query: 316 tcattttagattgctggcttccagaaccataagaaattaaatctcatttgtttcaagcca 375
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 tcattttagattgctggcttccagaaccataagaaattaaatctcatttgtttcaagcca 575

                                                                       
Query: 376 tcagcttgtggcaaatcgttacagccctctatataaaattaacacaaggataaattaatt 435
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 tcagcttgtggcaaatcgttacagccctctatataaaattaacacaaggataaattaatt 635

                                                                       
Query: 436 gttcactgaatttttctcgtataaagtgcagaccttctgttatgcagacatataataata 495
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 gttcactgaatttttctcgtataaagtgcagaccttctgttatgcagacatataataata 695

                                                                       
Query: 496 ccaagatagagtatgtgtatcttaacctcactacaactaatccttttcgcatgctacaaa 555
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 ccaagatagagtatgtgtatcttaacctcactacaactaatccttttcgcatgctacaaa 755

                                                                       
Query: 556 gattaagtctgctttgtttggaggacaacaaattttggtaactgccttgtttggaggaca 615
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 gattaagtctgctttgtttggaggacaacaaattttggtaactgccttgtttggaggaca 815

                                                                       
Query: 616 acaaatctttgtgtgaccaacctgtgaaggcagaatatttatagcctagactggctcttt 675
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 816 acaaatctttgtgtgaccaacctgtgaaggcagaatatttatagcctagactgggtcttt 875

                                                                       
Query: 676 gtgtcagtctccctcagaaggctgaagaactgaagctcaatccccttttatatttcaaac 735
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876 gtgtcagtctcc-tcagaaggctgaagaactgaagctcaatccccttttatatttcaaac 934

                           
Query: 736 tcaaatgaagcttagg 751
           ||||||||||||||||
Sbjct: 935 tcaaatgaagcttagg 950


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 751
Length of database: 1150
Length adjustment: 10
Effective length of query: 741
Effective length of database: 1140
Effective search space:   844740
Effective search space used:   844740
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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