BAC Information

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BAC

Clone NameMSMg01-050O03
Chromosome1 (Build37)
Map Location 106,679,879 - 106,680,356
singlet/doubletsinglet
Overlap geneCdh20
Upstream geneLOC383546, LOC100041134
Downstream geneRnf152, LOC100041985, Pign, LOC666249, 2310035C23Rik, LOC100042023
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-050O03.T7 (MSMg01no050_o03.b1)MSMg01-050O03.TJ (MSMg01no050_o03.g1)
ACCAG279823AG279824
length1,1721,188
length of high quality
(start - end)
589 (114 - 702)616 (113 - 728)
definitionCHROMAT_FILE: MSMg01no050_o03.b1 PHD_FILE: MSMg01no050_o03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:49:47 2005CHROMAT_FILE: MSMg01no050_o03.g1 PHD_FILE: MSMg01no050_o03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:49:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATGGGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGT
TTAGCTCTGAACCCCTTTTAGAATGGGGTTATTTGATTTTCTGGAGTCCA
CCTCCTTGAGTGATATATATTAGATATTATTCCCCTATCAGATTTATGAT
AGCTAAAGATTCTTTTTTTCCATTTTTATTAGGTATTTAGCATATTTACA
TTTCCAATGCTATACCAAAAGTCCCCCATACTCACCCACCCCCACTCCCC
TACCCACCCACTCCCCCTTTTTGGCCCTGGCGTTCCCCTGTACTGGGGCA
TATAAAGTTTGCATGACCAATGGGCCTCTCTTTCCAGTGATGGCCGACTA
GGCCATCTTTTGATACATATGCAGCTAGACTCAAGAGCTCCGGGGTACTG
GTTAGTTCATAATGTTGTTCAACCTATAGGGTTGCAGATCCCTTTAGCTC
CTTGGGTACTTTCTCTAGCTCCTCCATTGGGAGCCCTGCGATCCATCCAT
TAGCTGACTGTGAGCATTCACTTCTGTGTTTGCTAGACCCCGGCATAGTC
TCACAAGAGACAGCTACATCTGGGTCCTCTTGATAAAATCTTGCTAGTAT
ATGCAATGGTGTCAGCGTTTGGATGCTGATTATGGGGTGGATCCCTGGAT
ATGGAACTCTCTACATGGTCCATCCTTTCATCTCAGCTCCAAACTTTGTC
TTTGTAACTACTTCCATGCGTGTTTTGTTCCCAATTCTAACGAGGGGCAT
AGTGCCCACACTTCAGTCTTCATTCTTCCTGAGTTTCATGTGGTTAAGCC
CATTGTATCCTTATATCTTGGTCCCACCTAAGGTTTGGGGCCTAATATAC
ACTTTATTCAGGGACGCACCTTCTTGGCGTGAAGCTCCCTTTGTCGAATG
GCGTTTCCCTTCCCTTCAGGAACGGAATGCCCCTTCCCAGGTCCCATCCC
ATTTTGCCCTTAAGGAATTTTCCCTAAAATTTCCTTTCCTTTTTTAATTA
GCTGGAGCAAGCCTCCTTCCCATTTGGGGTCAAAAATGTAACCCCCCAAT
TTTTTCCTCGGGAACTCCCCTTCCCCCTTCCGGGTTGGAAGAGGGGCACA
TCCTTAAGGTCTTTCTTTTCTCCACAGCTCTTCTCCTGGCCTCTTATTTA
CATTAAACAAAATGAGGCCCGT
ACACGTTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCCCTAAAGGCTCACAATTGCATTACCACATCTCTGCT
AGAGCCCTAGGCAACTTATAGTCAGCTACTGAAGACAGTGCAAAGTAGCC
CTACATCCCTACACCTGGAATTAAAACAAAAGCACATTCTTCTAATATTT
CTGGGTTTTTGTTTGTTTTTTTTTTTTGTTTTGAAACCAAAATTTCAGAA
CTTTCACTACAGGATTCCTTGATGAATCTGAAGTTCACTGATTATTTAGA
ATGCCAGGCCCAGAGATCCTCATGTCTCAGAGTCAAAGGGCTAGGATTCC
AGGGGTGGGCCACTTTGTTGGCTTTTTATATGGGTTCTCATGACCTCATT
CCTTCAGAGTGACATAGCAAGTACTTTACTGACTCTGCTATCTTCCAGCC
TGTGAAAAAAAATCATTCTTAAAATGTTGGCCTTTTGAAATATGCAATAA
GATCATCATCAAATACAAAATAACCCAATAGGACAGTCATGATCAAAAGA
CAGAAAGATCTATAATGACATAGTAAACACCAACAGGATGACTGCCAGGA
CTTCCTGGGTCTGTAGTAATGAAAGTAGTTAATCTTGTTTCATGTGCGTA
ACAGCTTGGAGACCTTCTTTATCCCAGGTTTTCAGAACTGCATCAAAATG
TCATTGTTAGCCTTTCCTTTAAAGACATTTAAATAACCACCAAAAACCTT
ATTTTGCTCATTTACTTAACATTAATTTCAGGCAGTTCTGAAATGTTTGA
AAGGAGCAACATCCTTTTGTAATAGACAAATACCAAATAATTTTTTGAAA
TTGATGTATCTTTAGGCCTTTGAAAAGAAGGTTTTGCAGAATTTTGCACT
AAGTTAACCCTAATGGCCTCCAAACCTCTGGAAAATTTGCCCAACCTTTT
CCAAACAAAAATCCATGCCATTCTTCCGGCTGAACCAAATGAAAGGTGGG
AATAACCTGGAAATTAATTTGAAACAACAAAAACTTTTTACTTTTTAGGG
GTAAAGGAAATCTAGGCTTTCCAAATTAAACAAATGGCCCTAAAAGCTCA
ATTGTGCGCTGTGGAGAAACTCTCTTTGATAAAAAACACCTCATTCTTAT
AACCTCCCCAAAAGAGAATGAGCAATTTGCGTTCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no050_o03.g1 MSMg01no050_o03.g1 CHROMAT_FILE:
MSMg01no050_o03.g1 PHD_FILE: MSMg01no050_o03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:49:47 2005
         (616 letters)



>mm_chr1_106679341_106680356
          Length = 1016

 Score =  909 bits (470), Expect = 0.0
 Identities = 476/478 (99%)
 Strand = Plus / Minus

                                                                        
Query: 139  ctttcactacaggattccttgatgaatctgaagttcactgattatttagaatgccaggcc 198
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1016 ctttcactacaggattccttgatgaatctgaagttcactgattatttagaatgccaggcc 957

                                                                        
Query: 199  cagagatcctcatgtctcagagtcaaagggctaggattccaggggtgggccactttgttg 258
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 956  cagagatcctcatgtctcagagtcaaagggctaggattccaggggtgggccactttgttg 897

                                                                        
Query: 259  gctttttatatgggttctcatgacctcattccttcagagtgacatagcaagtactttact 318
            |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 896  gctttttatatgggttctcatgacctcagtccctcagagtgacatagcaagtactttact 837

                                                                        
Query: 319  gactctgctatcttccagcctgtgaaaaaaaatcattcttaaaatgttggccttttgaaa 378
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836  gactctgctatcttccagcctgtgaaaaaaaatcattcttaaaatgttggccttttgaaa 777

                                                                        
Query: 379  tatgcaataagatcatcatcaaatacaaaataacccaataggacagtcatgatcaaaaga 438
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776  tatgcaataagatcatcatcaaatacaaaataacccaataggacagtcatgatcaaaaga 717

                                                                        
Query: 439  cagaaagatctataatgacatagtaaacaccaacaggatgactgccaggacttcctgggt 498
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716  cagaaagatctataatgacatagtaaacaccaacaggatgactgccaggacttcctgggt 657

                                                                        
Query: 499  ctgtagtaatgaaagtagttaatcttgtttcatgtgcgtaacagcttggagaccttcttt 558
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656  ctgtagtaatgaaagtagttaatcttgtttcatgtgcgtaacagcttggagaccttcttt 597

                                                                      
Query: 559  atcccaggttttcagaactgcatcaaaatgtcattgttagcctttcctttaaagacat 616
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596  atcccaggttttcagaactgcatcaaaatgtcattgttagcctttcctttaaagacat 539


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1016
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1006
Effective search space:   609636
Effective search space used:   609636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)