BAC Information

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BAC

Clone NameMSMg01-051M03
Chromosome1 (Build37)
Map Location 63,098,554 - 63,098,805
singlet/doubletsinglet
Overlap genenone
Upstream genePard3b, LOC667592, Nrp2, LOC100043070
Downstream geneA430093A21Rik, Ndufs1, Eef1b2, Gpr1, 1700039I01Rik, 4930431J08Rik, LOC667644, LOC100042638, Adam23, Gm215, Mdh1b, Fastkd2, 4933402D24Rik, LOC671842, OTTMUSG00000013918, Klf7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-051M03.T7 (MSMg01no051_m03.b1)MSMg01-051M03.TJ (MSMg01no051_m03.g1)
ACCAG280426AG280427
length1,2651,437
length of high quality
(start - end)
252 (116 - 367)286 (74 - 359)
definitionCHROMAT_FILE: MSMg01no051_m03.b1 PHD_FILE: MSMg01no051_m03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:51:53 2005CHROMAT_FILE: MSMg01no051_m03.g1 PHD_FILE: MSMg01no051_m03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:51:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATTGCGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAATTCCTTAG
TGAGGAGGGGCCCCATTACATTCCTGAATGAGACACTAAGAACATCTAGA
TTTCCCATTTTCTCTATTTTACCCCCCAACTTACAGAATAAACTGTAAAT
TAAAGAATAAATCCATAGGAAACAAAAGAGGTCTTAAGAAACGTAAGTTT
ACAAATTCCAGCCACAGTAGTGGGGTTTTACTTGATCTATTTGCTTCTAT
TTACCCTGTAACTACGTGTCTAGCCATCTTAAGTGTAAACCACAGATCAT
GTGCTAAAGAACATGATCCTCATCTGTTCTATGAACAATAATACACGGTC
TAAGGGCGTTCTACATTTTGAGGCCCCAGGTTATTCTTTTCTTTATTTAT
CTGCCAGGCAGCAAAGGCCAGCTATACACCTTGCCACGTCCACACATCTT
TTGTAAAAAGGTCCGTCACTAGTTTGTTTTGTCAACTAACATGATTTATC
AATTATCTGCAGCCTACACCTAACTTTATAGCTTTTACTATACTTTAGGT
TACTATTTTCTTTACTCTCCTTACTGCTCTATTCATTTTCCTTATTATCC
TTGATCCGACTGTCTATATTCATTTTCCTCCTTCTCTTTCTCCCTCTTTT
TCTTCTTCTTTCTCTTTTGATTTTTCATCTGTCTAATTCATTATTTTTTT
TTATTCTTCTTTCCTCCCCCTCTTTTTTTCTTATTTTTTTCTTTTCTTTC
TTTTTCTTCATCCTTTTCCTCTCTTCTTTCTCTTCCTCTCTTTTTTTTTT
TTTTTTATTAATTTTTTATTTTCTCCTTTTTTCTCTCTTTCACTCTTTTT
TCCTATTTATATTTTATTTTATAATTTTTTTTTTTCTTTTCCTTTTTTTT
ATATTTAATCTTCTTTGTTTTATAACTTTTTCTTCCTCTTTTCCTTTTCT
TCCCTATATATCATTTCTTTCCTTATCTACCTCTTTTTTCTACTCCCTAC
TTTCTTCTTTTTCTTTCTCTCTTCTTTCTACTCTATTATTCTTCTATTTT
CTCTTTTTTTCTCCCCCCTTTTCTTCTATTCACTTCTCTCATCTTATCTC
CTTTACTTATCTCTCCCTTTATTACCTCATTTTTCTTTTTTATCCTCCTC
TCTCCTTATTTTTCTTTTCCATTTTTTTCTCCCTTTCACCTTTTTTCCCT
TTTTTTAGTTTCTTCTTCTTCTCTCATGCCTCCACCATTTTTTTTTTTTC
CTCTTCTTTCTCTCC
NTTAATAGACAGGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCCTCTAAATTCTCTCCCTAAAACAGGGCGTAAAG
TTTCCTCCGTTAAAGCTAACTCATGCCCCCTTTTGTCAAGGCCTCTCCCC
TCTTTCTCTCCAGGATATATAGATACAGATACAGATAGATACAGATACAG
ATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGAT
ACAGTTACAGATACAGATACAGATACAGATACAGATACAGATACAGATAC
AGATACAGTTACAGATATAGATGTTGGGAATTTTTTTATTTTTTGAGATA
GGTTCTCTCTGTGTATCTTTGGCTGTTGTGTTACTAGCCTTGTCCTCTTT
TTTTTTCTTAGCTCCATCCTGCTTCTGCCTTTCTTTGTGCTGGTTTTCCC
CCTCTTTTTTTTTCTTCCCCTCTTTTTTTTATTTTTCTGTTTATTCAAAA
AAACTCTTTGTTTTTTTTTTTTGTTTATTTTTTTATTTTCTTTGCATGCT
TTTTTTTTTTTTTGTTTTCCTCTCATTCCTTCCTTTCTCTCTCTTTTTTC
TTTTTATTTTCTCTTATCTTTTTCCTTTTTTTTTTTCTAACTTTTTCTTT
TTTCTTTTTCTTCTATTTCTTTTATTTTATTCTATATTTTCTTTTTTTTT
ATCTACTTTCTCCTTTTATTTTTCCCTTTTCTCCATTTATTATTCTTCTC
CTTTATTATTTTTATTTTTTCTTTTTTTTCTTTTTTTTTCTTTTTTTTTT
TTTTTTCTTTTATTTTTTCTCCCCATCCGCTATAACTTATTTTTTTTTTT
TTTTCTCATTACCCTACTTATTACTTTTCTTCTTTTCATATATTTTTATT
TTATCTATTTTCTCCTTCTTCTTTTTATCCTTATTTTTTTCTTCTTTTTC
TTATTATTTTTTTTTATTATCTATATTTTCTCTAACTTTTTTTTTTATTT
CCCTATCTTTTTTTTATTTCTTTTACTAGTTTTAAATTATTACTTTTTCT
CTTTTTATCTTTATACCCTCTTTTATTTTTTATTCTCTCTTTTCTACCTT
TTTTTTTTTTTTTTTTTGATTTGATTATTCTTTTTTCTTTCTTTATTTCT
TACTTTTATTTTTTCTTATTCCTTTCCCGTCTCTTATTTCTTTTGCTTTA
TTTTCTAATTTTACTTTTCTCTATATCTTCTTACTATTTCTATCACTTTT
CCTCTTCCCTTTTCTTCTTATCTCACATATCTGCATCTTAATGACCTATT
CTCTCATACTCATCTCTCTAATTTACCTTCATCTTATCCTCTTACTACTG
TTCTCTCTACTTCTTCTCCATCTATTGTACATTCTATCTATCTGTCTTTC
TCCTTCATATATATATTTATATTTTCTACTTCTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no051_m03.b1 MSMg01no051_m03.b1 CHROMAT_FILE:
MSMg01no051_m03.b1 PHD_FILE: MSMg01no051_m03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:51:53 2005
         (252 letters)



>mm_chr1_63098354_63099005
          Length = 652

 Score =  433 bits (224), Expect = e-126
 Identities = 245/252 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   attttaccccccaacttacagaataaactgtaaattaaagaataaatccataggaaacaa 60
           |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attttacctctcaacttacagaataaactgtaaattaaagaataaatccataggaaacaa 260

                                                                       
Query: 61  aagaggtcttaagaaacgtaagtttacaaattccagccacagtagtggggttttacttga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagaggtcttaagaaacgtaagtttacaaattccagccacagtagtggggttttacttga 320

                                                                       
Query: 121 tctatttgcttctatttaccctgtaactacgtgtctagccatcttaagtgtaaaccacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctatttgcttctatttaccctgtaactacgtgtctagccatcttaagtgtaaaccacag 380

                                                                       
Query: 181 atcatgtgctaaagaacatgatcctcatctgttctatgaacaataatacacggtctaagg 240
           ||||||||||||||||||||||||||| | | |||||||||||||||| |||||||||||
Sbjct: 381 atcatgtgctaaagaacatgatcctcaacagctctatgaacaataataaacggtctaagg 440

                       
Query: 241 gcgttctacatt 252
           | ||||||||||
Sbjct: 441 gtgttctacatt 452


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 652
Length adjustment: 9
Effective length of query: 243
Effective length of database: 643
Effective search space:   156249
Effective search space used:   156249
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)