BAC Information

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BAC

Clone NameMSMg01-051M07
Chromosome1 (Build37)
Map Location 29,187,308 - 29,187,640
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665903, Gm597, LOC435614, EG623924
Downstream geneEG433283, LOC100040665, LOC665944
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-051M07.T7 (MSMg01no051_m07.b1)MSMg01-051M07.TJ (MSMg01no051_m07.g1)
ACCAG280433AG280434
length1,2391,283
length of high quality
(start - end)
372 (32 - 403)334 (77 - 410)
definitionCHROMAT_FILE: MSMg01no051_m07.b1 PHD_FILE: MSMg01no051_m07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:51:55 2005CHROMAT_FILE: MSMg01no051_m07.g1 PHD_FILE: MSMg01no051_m07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:51:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTCCTGTCATTGGGCGCTAAGACTCCATAGGGAGAGGATCCGCGGAA
TTCGTAAAATATTGCCTACTCTGAGACATTCAGAATTGCCTTTAGTATTG
TAAGAGAGACAGTGAAAGAAATCAGGCTTCACTATCTACTACATAGCGTT
AGAAATCTCACGGCAAGCTTAGCAAAGTATACTTAGAATCTTCATTACAT
TCAGGTATGACAACTACATTGCATATTAGAAGAAAGTGGCGAGTTCTGAC
AAATGGAGATTCCCTACAGATCCTTAAAAGAGAAGCCAAGTTAGTCCCAT
ATGCAGGAACACACAGTGACCTAGGAGGAAGGAAGGTTGTGGTCTAAGAA
GGAACTAGAGTACATACATAGAACTATAGATAGCTGACTCACTCCCATCC
TTTGTTTCTAGGGGGAAGGTGGACTCTATAATAGAATAGAATCGCAACCA
TTGCTTTGGTATGAAGCCCTTCGCCCCCGGTTTCTAAGATTAAGCCCACC
TTAGGTGTGGCTGCCTTCGCTCCCCGTCTGTTACCATTGATTTTATCCCA
CTTGGTTCCTGTTTGCTTTTCTTTATGCATCTTTTCCGTTCTTTTTCACA
TCTTCTTCTTACTTACTTCTTTGCTTCTTTTCTCCTTCTTTTTCTTCTCT
CTTTCTCTTCCTTTCTATCTGTTTTCCTCTTTCTTCCCTTTCTCTTTTTT
CTTCTTTCATTCTTCCCTTCTCTGTCTTTTTTCTCCCCTTTCTTTGTTTT
CTTTTTTCCTTTTTCTCTTCTTCTTCTTCTTTTTTTTTTCCTTCTTCTTA
TTCTTCTCTCTCCTCCTCTCCTCTTCTCTTTCTTTTTCCTTTTTATTTTT
TATTTTTTTTTTTATTTTTTCCTTCCCTTTTCTTTTTTCTTCTCCTTCCA
TTTCTTCCTTTCTTCTTCTTTCTCTCTTTCCTTTATCTCTTTCCTTTTTC
TCTTTTTCTTATACCTCTCTTCTTATCTTTTTTTATCTTTCCTTTTCTTT
TTTCCTTTTTCTTTTTTCCTCCCCCTCTCTTTTCTTTATTCTCTATTCTT
TTTCCTTTTCCCCTCTTTTTTCTCATTTCCTTTTCTTCTTCTCTCCTCGC
CATTTCTTTTCTCTCTCTCTACTCTCTCCTTCCTTTCTCCCTTAACTCCC
TCTATCCTATCCTTTTTTTTTTCCTTTTCTCTTTCCTTTATTTTTCTTAC
TTTTTCCCTTTTTTTTTCTTCTTCCCTTCTTCTCTTCTG
NCTTTCTTTNNNNATAGCTAGGAGGCTGGXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTCTTCAGAAATTCTATTCCAGT
TTCTACCTTAATGTTTCTATCCTTACTTCTTGCCCCGGACTCCTCAGTGA
AGAGTGTAACCTATGAGTTGTTAGCTAAAATAAGCCTTTTAATCTCCAAC
TTACATTGGATCATGATATTGATCACAACAATAGAAATAAAAGAGAGGCA
CAAATGAAAACCAAAAACTTCACAAGTAAATTAAATTCAAAATAGAAATT
ATATATTACTGCAAATAAGTTTATAAACAGACTATATATTTTTGATAATT
TCTTCTGGTATTGTCAACATTTATCCAAGTAAGCAGATGTTAACATTTTA
CCAGTATTTCATTTTTAACAACACTGTACTTGAATTCTAATTTAAACTTT
TCAAAACAATCCATGGATGTGCATCACCGCGGCTTTTATAGGAATTGAAA
GTGGTTTTCCAAATACACTTTGCATATTTGTTTTCATAATAATACTACAT
GAATTTTATATTTAGCCCTCTATCTATCTAACCTCCTTAAGTCTATAGTA
TTATTTGACATCATTTTCAATGAATATTTACTTACTAGGCTGATCTTCTT
AACTACTATTATTCACCTCTTTATAAAGTCTCCTATTTGCTATAGTTTAA
CCATTTCCTCTTTATTTTCGCTTCATTTTTCAATATTGACTTTAATGTCT
CTTTTTTCTTCTGCTTATTCTTTCTTCTTTTCCCGTTTTTTAATCCTTTT
TGTTCTTTGTCTTCTCAACACCTTTTTTTTTTCTTTCTTTTTTTCTGTTC
TTTTCCCAATTTTTTTTTTCTTTTCTTTTGTTCTTTTCTTTTTTTTTTTT
TTATTCATTCTTTTTCTTTCTTTCTCTCATTTCTTTCTTTCTTTTTTATT
TTTTTTTCTTCTTTTTTCTTTTTTTTTTTATCTTTTTTTTTTTTTCTCAT
TCCTCTCTTTTTTTTTCTTATTTACTCTTTTTTTTACTTCTTCTTTTTTA
ATATTCTTTTTTTCTTTTCTTTCTCATCATTTTTCCTTCTTTTTCCTATT
TTTTTATTTCCCTTTTTTTCTTATTTTTTTCACATTTTTTCCTCTCTATC
TTCCCCTTCCTTCTCTTTCTTTCTCTTCTATTATCTCTAATTTTCCCTGT
CCTTCTCCTTTTATATAATTCTTTCTCTCTAATTTTCTTTCTTTTTCTAT
TTTCATCTTTTCTTTCCACTTTCTACTCTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no051_m07.g1 MSMg01no051_m07.g1 CHROMAT_FILE:
MSMg01no051_m07.g1 PHD_FILE: MSMg01no051_m07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:51:55 2005
         (334 letters)



>mm_chr1_29186947_29187680
          Length = 734

 Score =  613 bits (317), Expect = e-180
 Identities = 329/333 (98%), Gaps = 1/333 (0%)
 Strand = Plus / Minus

                                                                       
Query: 3   tcttcagaaattctattccagtttctaccttaatgtttctatccttacttcttgccccgg 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 tcttcagaaattctattccagtttctaccttaatgtttctatccttacttcttgccccgg 635

                                                                       
Query: 63  actcctcagtgaagagtgtaacctatgagttgttagctaaaataagccttttaatctcca 122
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 agtcctcagtgaagagtgtaacctatgagttgttagctaaaataagccttttaatctcca 575

                                                                       
Query: 123 acttacattggatcatgata-ttgatcacaacaatagaaataaaagagaggcacaaatga 181
           |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 574 acttacattggatcatgatatttgatcacaacaatagaaataaaagagaggcagaaatga 515

                                                                       
Query: 182 aaaccaaaaacttcacaagtaaattaaattcaaaatagaaattatatattactgcaaata 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 aaaccaaaaacttcacaagtaaattaaattcaaaatagaaattatatattactgcaaata 455

                                                                       
Query: 242 agtttataaacagactatatatttttgataatttcttctggtattgtcaacatttatcca 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 agtttataaacagactatatatttttgataatttcttctggtattgtcaacatttatcca 395

                                            
Query: 302 agtaagcagatgttaacattttaccagtatttc 334
           ||||||||||||||||||||||| |||||||||
Sbjct: 394 agtaagcagatgttaacattttagcagtatttc 362


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 734
Length adjustment: 9
Effective length of query: 325
Effective length of database: 725
Effective search space:   235625
Effective search space used:   235625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)