BAC Information

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BAC

Clone NameMSMg01-051O19
Chromosome1 (Build37)
Map Location 112,394,607 - 112,394,720
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666508, Cdh7, LOC100041429
Downstream geneEG626652, Cdh19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-051O19.T7 (MSMg01no051_o19.b1)MSMg01-051O19.TJ (MSMg01no051_o19.g1)
ACCAG280549AG280550
length1,2641,342
length of high quality
(start - end)
115 (145 - 259)34 (78 - 111)
definitionCHROMAT_FILE: MSMg01no051_o19.b1 PHD_FILE: MSMg01no051_o19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:52:18 2005CHROMAT_FILE: MSMg01no051_o19.g1 PHD_FILE: MSMg01no051_o19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:52:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATATTTNNNACATCATTGGGCGCTAAGACTACTAAGGGAGAGGATCCGC
GGAATTCAATATTGAATGAGCCACGATAAAAGCCCTGGGAGAAAAANAAN
CATTCATTATTTTCCTTTAAAATGTCCTAAGNCACCCGAATGGNCAGAAT
GATAACTATATATGTATTATCTAATAACTACCTAGTTGCTACTTACATAG
TTCTCAAGCCAAGAGAATGCATACTTGATATTTTAAACTTAGCCAACTAC
TCATGGCTGGCTGTAGAGGTGAAAACACTATAGGATAATAAGGAGACGAT
AGTAGTGTCACTATATTTAATCGAAATGATTTCTATTTTCACTGACTATT
TTTGTTCCCCCTCCATACCCACACAAGACTGTATTTACCAACTACCATCA
TATTTTTTTTTTTGAGCAGCAGATCTAGATCACTATTTATCACGTCCCTA
TGATCGTTTTTTTTTTCCCCCCCTGCTTTGCTGTACTATCCCCCTAAAGA
TAAACGTTAATACTGTCTCTCTTCTTTCTATTCTTTTATATTTTTTTGTC
TTATTTTTGTTCTATTGTTTTTTTTGTTTCTTTTCTTTTCTACTTTGTTT
ATTTCTTTTTTCATCTTCTTTTGTTTTTTTTCTCCTTCTTTTCTCTTTCT
CTTCTTTTCTTTTTCTGTTCTTTTTATTTATTTCTTCTCTACCTTTTGTA
ATTTCTTTCTTTTTCTTTTTCCTTTTTTGTTTTTTATTTATTCTCTCCTT
TTTTTTTTTTTTCTTTTTCCTTCCTTTTTTTTTATTATCTCATCATTTTT
TCTTTTTTTTTTTTTTATTTGTCTTTTTCTTATTTTCTTTTCTTTTTTTT
TCCTTTTTTTCTATTTCTTTTTTCTTTTTATTTTTTTCTTTTCTCTCTCT
TTTTTATTTTTTTTTTTCCTTTATTCTTCTTTCTTATTTTTTTATTAATT
ATTTCTTCTTTTTCTTTCTTTTCTTTTCTTTTCTTTTTTATTCTTATCCT
CCTTCTCTTTTTACTTTTTCTTTTTTTTCTTTTCTTTATTCCTTCTTTTT
TATTTTATTTTTTTTCTTCTTCCCTTTCATTACTTTCTTACTTCCCTCTT
TTCATTTCCCTTTTTCCTTTTTCCTCTTCTCTTTTTCTTTCTTTATTTAT
TTATTATTTTTTTCTCTCTCTTCTTTTTTTCCCTTTTTTTTTTTATTTCT
TCTTTTTTTTTCTTTTTTTTTTTCTCTTTTTCCCGTTTTTTTTTTTTTCC
TCTTTTTTATCTTT
TTTTACAGCATGCGAGCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTTTTTATGTGGAATAATTTGAGAAGTATTAGTA
TTAGGTTTTTTCTGATGCTCTGATAGAACCCCANACTTGTTCTTGGGCTC
TTTTTGGTTGTTAGACTATTAATGATTATTTCTATTTTTATGGTAGTTAA
GGGACTTTATAGATATTCTTGACTCTGACTTATTCTTGCTGTTTGCTATG
TATCTATAGAATTGCTCTCTTTTTCTTATTTCTCTATTTTTGTTGTTTTA
TTTCTTTTGTATAATGTTTTTATTTTTCTTTTTTGCTTTTTTCTTTTTTT
TCTTGTTTTTTCTTTTTTTTTCTCTTTTTTTCCTCCATTTTTTTTTTTTT
TTTTTTATTTCTTTTCTATTCGTTTCTTTTTTCTTTGCTTTTTATCTTCT
TTTTTTTTTTCCTCCTTTATCTTTTTTACTTTTTTCTTCTTCTTATATTC
ACGTCTTGTTTATTTTTTTTTTTATTTTCTTTTTTTCTTTTACTCTCCTT
TTTTTTATTTTTTTTTCCTCTCTTTTTTTCTTTTTCTTCTTTTTTTCCTT
TTTTTTTTTTCTTCTTTCTATACTTTCTTTTTTTTTTTTCCTTCTATTTT
TTTATCTTTTTCTTACTTTTCCTTCTTTTTTTATTTTCTCTTTTTTTTTT
TTTTTCTTTCTTTTTTTTTTTTTCTTTTTTTCTTTTTTCCTTTTTTTTTT
TTCTTCTTCTATCTTTTCTTCTTTTTTTTTTTTTGTTCCTTCTTCTTTTT
TCTTTTTTTTTCCTTCTTTTTTTTTTTCTTCCTTCTTATTCTATTATTCC
ATTTTTTTTTTTTTTTTTTCTTTATTTCTTTTATTTACTTTTCTCTATTT
TTTTTTTTTTTCTTTTTTTCTTTTCCTTATCCATTTTCTTTTTCTTTTTT
TCGATTTCTTTTTTTCTTCTTTTCTTTATATTCTTTTATTCCTCTCTTTT
CTCTTTTTCTTTTTATTTTTCTTTTTTTTTTCTTTCCTTTCTTTTTTTTT
TTTCTCTTTATTTTTTCTTCCTTCTTTTTTCTTTCTCTTCTTATTTTTTT
ATTTTTTTTTATTCCCCTTTCTTTCNGTTTTCTATTCATTCCTTTTCTTT
AACTTTTTTTCATTTTCTATTTTTTTACTTTTTTTTCCCTTTCTATTATT
TCTTTATTTATTTTATATATCTTCTTTCTCTTTTAATGTTCTATATTTTT
TAGTGTTTTTTTCTTATCTTTTTTCTTCTATTTTTTTTTTTCTTATCTCT
ATTTCTCTTTTTCTCTCCTTTTATCTATTTTTGTTTATTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no051_o19.b1 MSMg01no051_o19.b1 CHROMAT_FILE:
MSMg01no051_o19.b1 PHD_FILE: MSMg01no051_o19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:52:18 2005
         (115 letters)



>mm_chr1_112394407_112394920
          Length = 514

 Score =  199 bits (103), Expect = 4e-56
 Identities = 112/115 (97%), Gaps = 1/115 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagaatgataactatatatgtattatctaataactacctagttgctacttacatagttct 60
           |||||||||||||||||||||||||||||||||| |||||||||  ||||||||||||||
Sbjct: 314 cagaatgataactatatatgtattatctaataaccacctagttg-gacttacatagttct 256

                                                                  
Query: 61  caagccaagagaatgcatacttgatattttaaacttagccaactactcatggctg 115
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 caagccaagagaatgcatacttgatattttaaacttagccaactactcatggctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 115
Length of database: 514
Length adjustment: 8
Effective length of query: 107
Effective length of database: 506
Effective search space:    54142
Effective search space used:    54142
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)