XXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGCGGAATTCA
TTCCATGACCATATAAGGAAGATGATTTAAAATGTTAACAATAGCACTTG
AATTCATAAATGTGATAAAATATTTTGAAGTTTCATTTGAGTATATGAAA
TGTTTTACATAGCTAAAAACATGCAATTATAAACAGCATTTGGTGAAGTG
GTTTAAATTTTTTTTCTTGCTTAGAAATATTTATCTAGGAATATTACTTT
TCAGAATAAATGTCAGTTGTTTAATATCATCTTCATATTATGTAATATGT
GAACTTTCCAGTAGCATTAATAAAAAGCTATGAAGTCTTAGTACATGTAT
TATGTTTTACAGATATTTATCTATCATATCAGTTTTTAAATGGCCAATAA
TTCTTTCTATAGTGACACAGTATTTCTTTTCCAAGTAATATATAGCTTCC
CTTCATTATTTAAATATTTTGTAAGAAGTTCATATAAGTATTACAATAAA
AATATTACAGTTGAATTTTAACATGGATTAGGCTGACATTCATTTTTCAG
AAAAGGAAATACACTTTCTTATATTGCATATAAAGTATCTAGATATTTTT
TGTATACCTCCAAGCTTCCTGAATTCTAGTCAGTCATGAAGCAGAAATGT
AAAACTAATCTGCAATTAAAATAAAGTCAGTAAGGAAATTCATTTTGATT
AAGTAAAATTTTAGTGATATTAATGCAGGATA

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXACTCTTGCACCTGCGTACAAGGCTTGTTTACTAGTT
AGGCACAGCAGAGGCCAGTGCCATCTTATAATGGCGATTGCTCATGGCAT
GCACAGCTCTCCTCAGCGATTGCTGGTGGCACGAACTCGATTGCTCGCGG
CACGGCTCTCCACAGTGTAAGAGAAAGTGGGGGAAAGCCTCAAACATATG
GGCACACGGGAAAAAATCCTGAACAGAACACGATGGCTTATATTCTAAGA
TCAAAAATAGACAAATGGGATCTCATAAAATTGCAAAGCTTCTATAAGGC
AAAGGACACTGTCAAAAGGACAAAACAGCAATGTACAGATTGGGAAAATA
TCAATCCTACATCCAATAGAGTGTTAATATCCAATATGTACAAAGAATTC
AAGGAATTTGACTCCAGAGAATCAAATAAATGTATTAAAATGGGGGAAAC
AGAGCTAAATTGAGAAATCTCAACTGGGGAAACTAGAATGGCTGCAAAGA
ACCTAAAGAAATGTTCATCATCATTAATAATTAGGGAAATGCAAATCAAA
ACAATTCTGAGATTCCACCACACACCAGTCAGAATGCCTAAGGTGGGTTA
GTGAGCAGGAGGAGGGGGGATGGGGATGCGGTCCTTCTTCTCCCCCTCTC
CTCTCCTTTCTCTCTCTTTTCCCAA

Query= MSMg01no052_c13.b1 MSMg01no052_c13.b1 CHROMAT_FILE:
MSMg01no052_c13.b1 PHD_FILE: MSMg01no052_c13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:52:41 2005
         (590 letters)



>mm_chr1_49675769_49676758
          Length = 990

 Score = 1091 bits (564), Expect = 0.0
 Identities = 579/584 (99%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattcattccatgaccatataaggaagatgatttaaaatgttaacaatagcacttgaat 66
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 gaattcattccatgaacatataaggaagatgatttaaaatgttaacaatagcacttgaat 731

                                                                       
Query: 67  tcataaatgtgataaaatattttgaagtttcatttgagtatatgaaatgttttacatagc 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 tcataaatgtgataaaatattttgaagtttcatttgagtatatgaaatgttttacatagc 671

                                                                       
Query: 127 taaaaacatgcaattataaacagcatttggtgaagtggtttaaattttttttcttgctta 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 taaaaacatgcaattataaacagcatttggtgaagtggtttaaattttttttcttgctta 611

                                                                       
Query: 187 gaaatatttatctaggaatattacttttcagaataaatgtcagttgtttaatatcatctt 246
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 610 gaaatatttatctaggaatattacttttcaaaataaatgtcagttgtttaatatcatctt 551

                                                                       
Query: 247 catattatgtaatatgtgaactttccagtagcattaataaaaagctatgaagtcttagta 306
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct: 550 catattatgtaatatgtgaactttccagtagcagtaataaaaagctatgaagttttagta 491

                                                                       
Query: 307 catgtattatgttttacagatatttatctatcatatcagtttttaaatggccaataattc 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 catgtattatgttttacagatatttatctatcatatcagtttttaaatggccaataattc 431

                                                                       
Query: 367 tttctatagtgacacagtatttcttttccaagtaatatatagcttcccttcattatttaa 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 tttctatagtgacacagtatttcttttccaagtaatatatagcttcccttcattatttaa 371

                                                                       
Query: 427 atattttgtaagaagttcatataagtattacaataaaaatattacagttgaattttaaca 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 atattttgtaagaagttcatataagtattacaataaaaatattacagttgaattttaaca 311

                                                                       
Query: 487 tggattaggctgacattcatttttcagaaaaggaaatacactttcttatattgcatataa 546
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 310 tggattaggctgacattcatttttcagaaaaggagatacactttcttatattgcatataa 251

                                                       
Query: 547 agtatctagatattttttgtatacctccaagcttcctgaattct 590
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 agtatctagatattttttgtatacctccaagcttcctgaattct 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space:   568400
Effective search space used:   568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)