Query= MSMg01no052_j06.b1 MSMg01no052_j06.b1 CHROMAT_FILE:
MSMg01no052_j06.b1 PHD_FILE: MSMg01no052_j06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:14 2005
(394 letters)
>mm_chr1_188030290_188031084
Length = 795
Score = 455 bits (235), Expect = e-132
Identities = 310/362 (85%), Gaps = 45/362 (12%)
Strand = Plus / Minus
Query: 3 gaattctttaaa-anactatcccctctaatattccttcactgatgctctgtaatatggga 61
|||||||||||| | | |||||||||||| |||||||||||||||||||||||||||| |
Sbjct: 406 gaattctttaaacagaatatcccctctaacattccttcactgatgctctgtaatatggaa 347
Query: 62 gtacatttctgacctataccctttgctttgctctgagaagcaaacactgttgtgtttctt 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 gtacatttctgacctataccctttgctttgctctgagaagcaaacactgttgtgtttctt 287
Query: 122 tgttttcatttaatgtcttctttacagctttagtgatttctattttgtttgcctaagaat 181
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 286 tgttttcatttaatgtcttctttacagctttagtaatttctattttgtttgcctaagaat 227
Query: 182 ctgattatttctcttttaaactaactttctttctttctttctttctttctttctttcttt 241
||||||||||||||||||||||||||| |||||| ||| ||
Sbjct: 226 ctgattatttctcttttaaactaacttactttctctct--ct------------------ 187
Query: 242 ctttctttctttctttctttctctctctctctctctctctctctctctctctctctttct 301
|||||||||||||||||||||||||||||||||||| ||
Sbjct: 186 --------------------ctctctctctctctctctctctctctctctctctct--ct 149
Query: 302 ttctctctttctttccttctctctttctttctatttagtgtgtgtgtgtgtgtg--tgtg 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 148 ttctctctttctttccttctctctttctttctatttagtgtgtgtgtgtgtgtgcatgtg 89
Query: 360 tg 361
||
Sbjct: 88 tg 87
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 795
Length adjustment: 9
Effective length of query: 385
Effective length of database: 786
Effective search space: 302610
Effective search space used: 302610
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no052_j06.g1 MSMg01no052_j06.g1 CHROMAT_FILE:
MSMg01no052_j06.g1 PHD_FILE: MSMg01no052_j06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:14 2005
(530 letters)
>mm_chr1_187947049_187947978
Length = 930
Score = 944 bits (488), Expect = 0.0
Identities = 519/530 (97%), Gaps = 4/530 (0%)
Strand = Plus / Plus
Query: 1 acagagctccacccacctctggtccttacagctgcttcaagataaaacacacaaaaaaat 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 203 acagagctccacccacctctggtccttacagctgcttcaagataaagcacacaaaaaaat 262
Query: 61 aagaaatgcaccactcgataggatatatatatatatatatatatatatatatatatatat 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aagaaatgcaccactcaataggatatatatatatatatatatatatatatatatatatat 322
Query: 121 atatatatatatataccaaattaacttttacccaatatagtgtctttattaattatttga 180
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 atatatatatata--ccaaattaacttttacccaatatagtgtctttattaattatttga 380
Query: 181 gaattttatacactgcaccctggtagaaaatctgaacaccagctttgcaaaccttaagta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaattttatacactgcaccctggtagaaaatctgaacaccagctttgcaaaccttaagta 440
Query: 241 gcaagcgcaactgcttgttttactttgtatcagtgatgacattgaaaagtgagaggctcc 300
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 gcaagcgcaactgcttgttttactttgtatcagtgatgacattgaaaaatgagaggctcc 500
Query: 301 cctctcctcctcccctccccctcccatcctcttttttccctttttctcccctcccctgtc 360
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 501 cctctcctcctcccctccccctcacatcctcttttctccctttttctcccctcccctgtc 560
Query: 361 ctatactatctccccttcccccccttctctctccttctcttagctcctccataactcttt 420
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 561 ctatactatctcccctttccccccttctctctccttctcttaactcctccataactcttt 620
Query: 421 ccctccccccttccccctccatcctcttcactctctcacccctcccatcctctcctctac 480
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccctccccccttcccc-tccatcctcttcactctctcacccctcccatcctctcctctac 679
Query: 481 cttcctctttctcctcccagttttgtctcctcttttatttcccttctcca 530
|||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 680 cttcctctttctcctcccagttttgtctcctcttttatttcc-ttctcca 728
Score = 99.3 bits (51), Expect = 6e-25
Identities = 51/51 (100%)
Strand = Plus / Minus
Query: 84 tatatatatatatatatatatatatatatatatatatatatatatatatat 134
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tatatatatatatatatatatatatatatatatatatatatatatatatat 285
Score = 97.4 bits (50), Expect = 2e-24
Identities = 50/50 (100%)
Strand = Plus / Minus
Query: 83 atatatatatatatatatatatatatatatatatatatatatatatatat 132
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 atatatatatatatatatatatatatatatatatatatatatatatatat 285
Score = 97.4 bits (50), Expect = 2e-24
Identities = 50/50 (100%)
Strand = Plus / Minus
Query: 86 tatatatatatatatatatatatatatatatatatatatatatatatata 135
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tatatatatatatatatatatatatatatatatatatatatatatatata 286
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 116
Number of extensions: 50
Number of successful extensions: 50
Number of sequences better than 10.0: 1
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 10
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space: 478400
Effective search space used: 478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
