BAC Information

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BAC

Clone NameMSMg01-052J10
Chromosome1 (Build37)
Map Location 26,568,128 - 26,568,662
singlet/doubletsinglet
Overlap genenone
Upstream geneBai3, LOC665595
Downstream gene4931408C20Rik, LOC677427
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-052J10.T7 (MSMg01no052_j10.b1)MSMg01-052J10.TJ (MSMg01no052_j10.g1)
ACCAG281037AG281038
length685667
length of high quality
(start - end)
423 (47 - 469)535 (73 - 607)
definitionCHROMAT_FILE: MSMg01no052_j10.b1 PHD_FILE: MSMg01no052_j10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:15 2005CHROMAT_FILE: MSMg01no052_j10.g1 PHD_FILE: MSMg01no052_j10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGG
AATTCATTCTTTTCAAAGCTGAGTAGTACTCCATTGTGTAAATGTACCAC
ATTTTCTGTATCCATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCGGCT
TCTGGCTATTATGAATAAGGCTGCTATGCACATAGTGGAGCATGTGTCCT
TCTTACTGGTTGGGACATCTTCTGGATATATGCCCAGGAGAGGTATTGCT
GGATCCTCCAGTAGTACTATGTCCAATTTTCTAAGGAACCGCCAGACATT
ATGAACTAACCAGTACCCCAGAGCTCTTGAGTCTAGCTGCATATGTATCA
AAAGATGGCCTAGTTGGCCATCACTGTAAAGAGAGGCCCATTGGACACGC
AAACTTTATATGTCCCAGTACAGGGGAACGCCAGGGCCAAAAAGTGGGAA
TGGGTGGGTAGGGGAGTGTGGGGAGGCTATTTTACCAATTTTATTTTCCA
TTTTTACCTATTTTTCCCCCAATAACAATATTTATCTACTCTTACCTATC
CTTTCTTCCTCCTTTTTTTTCTCCCCCTCCCTTTCCCCTAATTTATATTT
TTCACTTCCACCCTCACACACTTTTATTCTTTCCTTTACCTCCTCATCCC
ACCTTTTCTTTCGTTATCCACCACCTCCCCCCTTT
CCACATGAAGTGNTAGGCTGGCGGCGCCTGTTCTCAAXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCTTTAATGAATAAAAAAGAGGCAGTCA
TTGTGAAAGAGCAAGCTTTAATCATTTTCAAATTGTTGGACAGTTTGATT
TTGAATACACTGGTTTTGGAAGGGAACTGACTTTGAAATGAAAGTATAAA
ATCCCTTCACATAGGAGTCTTCAATTGTGTGCCTGAAAATATTTTGATTT
CTTTGTGTAAGTGCTATGGCTTATCATTGCCTCTAACTATATGCTTACCA
CAGTGTTTGAAAATTGAGCTGGCAATTTACATAGCATATCACAAGTGAGG
CAAAGCAGGAGAATATTAAATGGCATGCAAATTGATTCATGAATATGGAT
AGTATTCCAAGTTACAGATACTGTCATAACATCACAGAACTTAAAATGGG
ATTTTATTACAATGGCTTGATTTCTGTAGAATAAAGTATAGCAAATATGA
CTGACGATCCTAATGTCTAGGTTCCTCAACTTTGGCTTTGTGAGACACAA
ACCATATTTTTATTCAGTAGTTTTAAATGATAAAATGAAGTGTGCAACAC
ACAATAACAGAACTGTGAGAGTTACAATTCAAATACTCATTTGGTATGAG
CAATATTTCTTTAATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no052_j10.g1 MSMg01no052_j10.g1 CHROMAT_FILE:
MSMg01no052_j10.g1 PHD_FILE: MSMg01no052_j10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:15 2005
         (535 letters)



>mm_chr1_26567928_26568862
          Length = 935

 Score = 1011 bits (523), Expect = 0.0
 Identities = 532/535 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctttaatgaataaaaaagaggcagtcattgtgaaagagcaagctttaatcattttcaaa 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 735 tctttaatgaataaaaaagaggcagtcattgtgaaggagcaagctttaatcattttcaaa 676

                                                                       
Query: 61  ttgttggacagtttgattttgaatacactggttttggaagggaactgactttgaaatgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 ttgttggacagtttgattttgaatacactggttttggaagggaactgactttgaaatgaa 616

                                                                       
Query: 121 agtataaaatcccttcacataggagtcttcaattgtgtgcctgaaaatattttgatttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 agtataaaatcccttcacataggagtcttcaattgtgtgcctgaaaatattttgatttct 556

                                                                       
Query: 181 ttgtgtaagtgctatggcttatcattgcctctaactatatgcttaccacagtgtttgaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 ttgtgtaagtgctatggcttatcattgcctctaactatatgcttaccacagtgtttgaaa 496

                                                                       
Query: 241 attgagctggcaatttacatagcatatcacaagtgaggcaaagcaggagaatattaaatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 attgagctggcaatttacatagcatatcacaagtgaggcaaagcaggagaatattaaatg 436

                                                                       
Query: 301 gcatgcaaattgattcatgaatatggatagtattccaagttacagatactgtcataacat 360
           | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 435 gtatgcaaattgattcatgaatatgaatagtattccaagttacagatactgtcataacat 376

                                                                       
Query: 361 cacagaacttaaaatgggattttattacaatggcttgatttctgtagaataaagtatagc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 cacagaacttaaaatgggattttattacaatggcttgatttctgtagaataaagtatagc 316

                                                                       
Query: 421 aaatatgactgacgatcctaatgtctaggttcctcaactttggctttgtgagacacaaac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 aaatatgactgacgatcctaatgtctaggttcctcaactttggctttgtgagacacaaac 256

                                                                  
Query: 481 catatttttattcagtagttttaaatgataaaatgaagtgtgcaacacacaataa 535
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 catatttttattcagtagttttaaatgataaaatgaagtgtgcaacacacaataa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space:   485625
Effective search space used:   485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)