BAC Information

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BAC

Clone NameMSMg01-053F16
Chromosome1 (Build37)
Map Location 66,922,366 - 66,922,539
singlet/doubletsinglet
Overlap genenone
Upstream geneCrygf, LOC667781, EG667786, Mtap2, C030018G13Rik, Rpe, 1110028C15Rik, Acadl
Downstream geneMyl1, LOC100043192, Lancl1, Cps1, Kif22-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-053F16.T7 (MSMg01no053_f16.b1)MSMg01-053F16.TJ (MSMg01no053_f16.g1)
ACCAG281591AG281592
length725711
length of high quality
(start - end)
174 (71 - 244)242 (72 - 313)
definitionCHROMAT_FILE: MSMg01no053_f16.b1 PHD_FILE: MSMg01no053_f16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:14 2005CHROMAT_FILE: MSMg01no053_f16.g1 PHD_FILE: MSMg01no053_f16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGCG
GAATTCATTCACTTGCATATCATATTTACTCCTCACGAACCTAAATTGAC
TTTTATTCTAAATACCACATGCTAAGTCATTGTGGTAGGCTGAAAACCTG
AACACGTGTGGATCTCTAAAACCTGTAAATCTATTAATTTCTATGGTAGG
CATTATATTGAGGATTACAAATTGAGCAGATTATTATGCATGCCTGGCGG
GTTGGTCCCAATGTAATCAATCATAATAGCCGGAGGGAAGACCAACCAGG
AAGTGGTTGTGAAGACAGATTTTTAAGTTGGAATGATGTCTTCCCTCAAG
GACCCTTAAAGAGCACAATGTGGAAAGACCTTGAGTTTAGCACAGTGAGA
TTGATTTCATTCTTCTGACTTCTTTAAGTCACGTAAAAACTCTCGTCATT
TTTAAACATCATTAATTTCACCACCGCTTGCTATAACTATAGCATTAAAC
TAACTTATGCGGCCAGTACCTTTGCTCATATTTCTGACTGTCTCACCAAA
TATGATATGATATTTTTCCTCACTATTGTTTCCCTTTCCTTTATAAACAA
CCTTTCCTTCATCAATCATATATCTTCGACCTTTTCCTGCCCCATATAGC
TTCTCACACTCCTCCCTATCCAATGCCATTATTCAGCGCCCTATATTGAA
TACGTTCGACCCTTACCCATCTCCT
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTTCCAAAAAAATCACTCCTAGTCACTCCCATTCTCGGGGTGA
AATATTCAGGTGATGGGCCAGCAATGAATCAGGAGCTGTCATGCCATATC
AGGTGCTGAAATGTCACGCTGCAGGTTATAAAAGCAGCGCCATTTTCCCG
GTTCGGGATCTTCCTGATAAGCAAGCAATAAAGCTCTTGCTGTGGAAGAT
TCTAGTTTGTTGTATCTTTCTTGCCGGTCGAGCGGGACGCAATAGTGAAT
AGCTTTTACCTCCCTGNCTTTGCTCTCCTAGTACTGACCAGAAACTGAGG
TGCCATTTCCAGCACACTGCGCTAGGACATAGTCATAGAACACATCTTCC
TTCGAAAGCAGCTTCTAGGCTTCATTGGAAAAAACTTAAATCTGTGAATA
TTGGGAACAGAGTCTGTACATAGCTCAGGTGACAGAGTGACTGCCTAGCA
TTTAGCATGCCTAGGACTCAGTGATTAGTGCTGTCTTTACTTTAATGCCT
TTGGTGGGTCCACTTATTATATTGTAACACACTTGAGATCATAGAAAGGG
ACATCATGATGACCTAAGACCAAGACTGTCAACGATGTTGGTTAGAGTCT
TCTCTTGTATCCTCAGGCTAAAGAGACCTGAAACCAGAGTGACTCACATT
CCTGAGAAACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no053_f16.b1 MSMg01no053_f16.b1 CHROMAT_FILE:
MSMg01no053_f16.b1 PHD_FILE: MSMg01no053_f16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:54:14 2005
         (174 letters)



>mm_chr1_66922166_66922739
          Length = 574

 Score =  337 bits (174), Expect = 3e-97
 Identities = 174/174 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   catatttactcctcacgaacctaaattgacttttattctaaataccacatgctaagtcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 catatttactcctcacgaacctaaattgacttttattctaaataccacatgctaagtcat 315

                                                                       
Query: 61  tgtggtaggctgaaaacctgaacacgtgtggatctctaaaacctgtaaatctattaattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 tgtggtaggctgaaaacctgaacacgtgtggatctctaaaacctgtaaatctattaattt 255

                                                                 
Query: 121 ctatggtaggcattatattgaggattacaaattgagcagattattatgcatgcc 174
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 ctatggtaggcattatattgaggattacaaattgagcagattattatgcatgcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 174
Length of database: 574
Length adjustment: 8
Effective length of query: 166
Effective length of database: 566
Effective search space:    93956
Effective search space used:    93956
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)