BAC Information

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BAC

Clone NameMSMg01-053O07
Chromosome1 (Build37)
Map Location 81,794,378 - 81,794,582
singlet/doubletsinglet
Overlap geneEG665145
Upstream geneLOC665092, 9430031J16Rik, EG621020, LOC433328
Downstream geneIrs1, Rhbdd1, Col4a4, Col4a3, 5230400G24Rik, Tm4sf20, LOC100039491
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-053O07.T7 (MSMg01no053_o07.b1)MSMg01-053O07.TJ (MSMg01no053_o07.g1)
ACCAG281981
length715703
length of high quality
(start - end)
---186 (128 - 313)
definitionCHROMAT_FILE: MSMg01no053_o07.b1 PHD_FILE: MSMg01no053_o07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:56 2005CHROMAT_FILE: MSMg01no053_o07.g1 PHD_FILE: MSMg01no053_o07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:56 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGAATGGGCG
GAATAATCAGACCTGTTCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTATGCTTCCTATTTTTAAATTATGTT
TACTTTCTTTTCATTTTTAATTTTTCCCCCGTCTTTTTTTTGCTTTTGGA
AGGCTTCAATGTCTGCTGGCATTAAGTATTCCCTTTTTTATTTTGCCATG
CCTTTTTTTAACACG
CTCGATGATGTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGGGTGAATTGGCCACACCAGCTC
CTAAGTTCACTGCTGCTTATCCCCAGGTGGCCTGAGGGTGTACAGGTACC
CTCTGTGCCCATCCAGCAGTTCCCCACGGAAGACTGGAGTGTGCACCCTC
CCAAAGCACAGGGCACTGAGTGTGTTGGAGCCACCACTGAGTGGTCCTGA
GCTGCTCTACAGACACCTGAGCAAAGAGGAAATAGGTAGAAAGAAAAAAA
AAGTTTCTAACAGCTGATATTTTTTTGTAAAGAATGTTTTGACTGTTAAT
TTAGACATGATTTATTTCTAGGCTATACCCCTGGAAGAGGGTAGGTGACA
TACACTGAGAGGACTCACTCACTCTACGAAGTTATTATATGTGAATGTTA
TTGGGCAAAAGCCTTTTGTTATGGTCACTTCCCAGGCTCGAGTCATGTGC
ATGTAGAGTAAAAAAGGAATCCTACTGACTTGTATGGAAAGACTTTCCCT
ATATATGGGACAAATTTTGAATGCCCGTGTTTTGTATTGCCCTGTCTTAA
ACGTCCCCACTTTAGGGCTCTGGTCCTTACTCCTATACATACTTTTCTTG
GTTTTTTAATGGCATATTCCTTTACCCCTTTCACTGTATATCCTTGTCCC
CTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no053_o07.g1 MSMg01no053_o07.g1 CHROMAT_FILE:
MSMg01no053_o07.g1 PHD_FILE: MSMg01no053_o07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:54:56 2005
         (186 letters)



>mm_chr1_81794202_81794785
          Length = 584

 Score =  130 bits (67), Expect = 6e-35
 Identities = 161/209 (77%), Gaps = 34/209 (16%)
 Strand = Plus / Plus

                                                                       
Query: 5   ctgagggtgtacaggtaccctctgtgcccatccagcagttccccacggaagactggagtg 64
           |||||||||| |||||||||||||||||||||||||||||   ||| ||||||||||  |
Sbjct: 177 ctgagggtgtgcaggtaccctctgtgcccatccagcagttgttcacagaagactgga--g 234

                                                                       
Query: 65  tgca-------cc--------ct--c----c--caa-------agcacagggcactgagt 94
           ||||       ||        ||  |    |  |||       ||| |||| ||||||||
Sbjct: 235 tgcacagccagccactgaggactgactggtcagcaactttcacagcgcaggccactgagt 294

                                                                       
Query: 95  gtgttggagccaccactgagtggtcctgagctgctctacagacacctgagcaaagaggaa 154
           | ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 295 gggttggagccaccactgagtggtcctgagctgctctgcagacacctgagcaaaggggaa 354

                                        
Query: 155 ataggtagaaagaaaaaaaaagtttctaa 183
           | | |||||| ||||| ||| ||| ||||
Sbjct: 355 a-atgtagaaggaaaataaa-gttcctaa 381


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 186
Length of database: 584
Length adjustment: 8
Effective length of query: 178
Effective length of database: 576
Effective search space:   102528
Effective search space used:   102528
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)