BAC Information

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BAC

Clone NameMSMg01-054E03
Chromosome1 (Build37)
Map Location 6,474,825 - 6,475,019
singlet/doubletsinglet
Overlap genenone
Upstream geneOprk1, Npbwr1, 4732440D04Rik, Rb1cc1, EG620393, LOC100039302, LOC664946
Downstream geneSt18, LOC665015, LOC665027, LOC100039347, LOC435608, Pcmtd1, LOC545302
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-054E03.T7 (MSMg01no054_e03.b1)MSMg01-054E03.TJ (MSMg01no054_e03.g1)
ACCAG282245AG282246
length774769
length of high quality
(start - end)
197 (178 - 374)380 (133 - 512)
definitionCHROMAT_FILE: MSMg01no054_e03.b1 PHD_FILE: MSMg01no054_e03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:24 2005CHROMAT_FILE: MSMg01no054_e03.g1 PHD_FILE: MSMg01no054_e03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNNNNNNNNNNNNNNNNCCAATTTTATCATATTCCCCGGAGCGCGG
GGGGAATCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGAATGGGAG
GGNGGAANNNTTATNATGCTTTATGGAGTGAGGAANAANTNAGAAGTAAT
TAGGTAAAGAGTNTTNNTGGTTATCCCGCTAGGTATAAATGGGTGAGAAT
AAAGAGTGAGCATGTGGTTAAAGCATTAAAAGCCAAGACTCCTGGGCCAA
CGAATCACAGTCTACTCACTCCCTTTACCCCTCAAATCTTTTACTTATTC
ACCAAGATATCCCTTTATATCGACCAGTCTAGGTCCTCCAATAGATAGAT
TTTGCTTGCAAGACCTGACTTTTTTTTTTGATTAGATGAATTTGATGAAA
GAAGTTGAAAAATTTTTACTCGCACCTGTGTTTAAGAATAGGGGCTCTAG
GAAAAGCAACTTTCAGGCTTCCTCCTGGGGATATCTTGACTCACCCTGTT
CTCACCCTGTGCCTTCTTCCTTCTTTAATGTTGGAGGTGGTGTGAGATGG
CCTAGTGTAAATGTCCTTTGGGCAGTCTAAATGCAAATCACCCCTATTCC
TTTTCCATTAGCACTTTGTTGACTTCCAAAGTCCATCAACAAAGCATACT
GGTTTAAAAAAGTTCTAAGGAATCTTGCCAGAATAAAGTTGAAGTTTGAG
AAAAATTTTATTCATTTTCCATGATAAAATCTTCTCTTTTTTTAAGAGTA
AACAATATAAAAGTGCTTCAGAAT
NNNNCCCCNNTTTTTTNNCCCCCCCCCCCTCCNNNACGTTTTTTTTTNNN
NNNNTCGAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATTTTTCCAAGACTT
TTATCATGAATGGGTTTTGGACTTTGTGAAATGCTTTCTCAGAATCTAAC
GAGATGATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAGTGGATTAC
ATTGATGGATTTCCATATATTGAACCATCCCTGCATCCCTGGTATGAAAC
CTACTTGGTCAGGATGAATGATTGTTTTGATGCGTTCTTGGATTGGGTTA
GCGAGAACTTTATTGAGGATTTTTGCATCGATATTCATAAAGAAAATTGG
TCTGAAGTTCTCTATCTTTTGGGATCTTTTTGTGGTTTAGGTATCAGAGT
AATTGTGGCTTCATAGAATGAGCTGGGTAGAGTCCCTTCTGTTTCTATTT
TGTGGAATAGTTTGTGAAGAACTGGGATTAGATCTTCTTTGAAGGTCTGA
TAGAACTCTGCACTAAACCCATCTGGTCCTGGGCTTTTTTTGGTTGGGAG
ACTGTTAATGACTGCTTCTATTTCTTTAGGGGATATAGGACTGTTTAGAT
CATTAACCTGATCCTGATTTAACTTTGGTGCCTTGGTATCTGTCTACAAA
CTTTGTCCATTTCCTCCCGATTCTCCCGTTTTTGTTGACCCATAGCCCTT
TTATAGCACGTATCTGAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no054_e03.b1 MSMg01no054_e03.b1 CHROMAT_FILE:
MSMg01no054_e03.b1 PHD_FILE: MSMg01no054_e03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:24 2005
         (197 letters)



>mm_chr1_6474625_6475221
          Length = 597

 Score =  333 bits (172), Expect = 5e-96
 Identities = 190/196 (96%), Gaps = 2/196 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   gctaggtataaatgggtgagaataaagagtgagcatgtggttaaagcattaaaagccaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 gctaggtataaatgggtgagaataaagagtgagcatgtggttaaagcattaaaagccaag 336

                                                                       
Query: 61  actcctgggccaacgaatcacagtctactcactccctttacccctcaaatcttttactta 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 actcctgggccaatgaatcacagtctactcactccctttacccctcaaatcttttactta 276

                                                                       
Query: 121 ttcaccaagata-tccctttatatcgaccagtctaggtcctccaatagatagattttgct 179
           |||||||||| |  ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 275 ttcaccaaga-agcccctttatatcgaccagtctaggtcctccaacagatagattttgct 217

                           
Query: 180 tgcaagacctgacttt 195
           ||||||| ||||||||
Sbjct: 216 tgcaagagctgacttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 197
Length of database: 597
Length adjustment: 8
Effective length of query: 189
Effective length of database: 589
Effective search space:   111321
Effective search space used:   111321
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)