BAC Information

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BAC

Clone NameMSMg01-054F21
Chromosome1 (Build37)
Map Location 23,967,770 - 24,062,574
singlet/doubletdoublet
Overlap gene1110058L19Rik, 4921533L14Rik
Upstream geneLOC665731, 4933415F23Rik, Rn4.5s-ps4, EG623356, Ogfrl1, LOC665782, B3gat2, Smap1
Downstream geneLOC665808, Col9a1, Col19a1, LOC100040475, LOC665829, Lmbrd1, 4930472D16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-054F21.T7 (MSMg01no054_f21.b1)MSMg01-054F21.TJ (MSMg01no054_f21.g1)
ACCAG282321AG282322
length685701
length of high quality
(start - end)		557 (62 - 618)613 (77 - 689)
definitionCHROMAT_FILE: MSMg01no054_f21.b1 PHD_FILE: MSMg01no054_f21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:32 2005CHROMAT_FILE: MSMg01no054_f21.g1 PHD_FILE: MSMg01no054_f21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,967,770 - 23,968,326)(24,061,962 - 24,062,574)
sequence
GCGGCCGCTAAACGACTCACTTTACAGTATGAATCCGCGGAATTCTCCAG
TTACGTCAACATTGCCTTTGTATGACCATTTACTTTCAAATTGTAATTAT
TTAAAGTTACCCAGTTTCAAGATCAGACTACTCACATTTCCAAGGCATTT
TGCCCCTTGTAAGTTTAGTGGCTCTTGTAGTATTAGGATCCAGCACATAC
TCTTTTCTACACATGGTCCTAGGTGCTTCTTGGAGGATCCTAATAGATGC
CTACAATAATAGGGAAATTATTTTTTAAGAAAGCATATCTTATTAGACTA
TCTTATTTATTTTATAAATATAAATATATTAGTATAAATATTTATATATT
ATTTATTACACCTTTTTATTTCTTATTTCTTATTATTTGTATCTGTGGTG
TACGTATGTGCTTATGTTCATGTGCATATATGTGTGCATGTAAGTGTGTG
TGCATGTGTGCAGAGGCCAGAGGCTGAAATTAAATGTCTTCCTTTCTACC
TTATTTTTTTGAGGTCTTGTCTCACGGATCCCGATTCCTCAGTTGCACTA
TACTGGCTAGCCAGAGAACTACAGGGATACCTCTATCTCTACCCTACCCA
CCCCTCAAGCTGGGGCTATAGAACTGAAGCACACCTGACTTTTTACCTGG
GCACTGGGGATCTAAATCATCCTGACATAGCAAGT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAACTAAGAGTCTACTACTAATTAA
CGTAAAGCCTTTCTGTTTCATGCTGAAAACATACCTGGACAAAAGTAACT
GAAGTAGTAAAATCATTATTAATAGATTTTCATTTTATGCTAAGATAATA
AAATGATATAATTTAAGAGCATTGTGCCATTATTATAAATAATGTTTTTA
TTACAGAAATATGGAGTAAGGAGTAGTTTTTTTTATAATTCAGTTATTTA
ACTGAGTAAAAGAATACAGTACAGAAATGATCATGAAGCATTGTTTAGTC
TCTCTTTGATTTAATTTTTGATTTATTTTGGTTTGTGTAGGCGTGCATGT
GTATAGTGTACTTAATCCATGAATGAGGATATGAATGTATTTTTAGCTTT
GTCTCTTTTCTGGATCTTCTATTTCATCCCAAAGTTACTGCCTTTTAAAG
TTTTAAACAATTTATGAATTTTAATTAACATTTTTATATTATGCCATAAT
TCCATTTTAACTTGGAATTGTATAATATTGGGGTTCAGAGATGGCTCAAG
GCTCAAGAGTACATAATACCCCTTCAGAGGACGCATGTTTTATTCTCAGA
ACCTTTGCCAGGTGACTCATAACTACCTGTAGCTCCAGCTCTAGGGAGAT
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no054_f21.b1 MSMg01no054_f21.b1 CHROMAT_FILE:
MSMg01no054_f21.b1 PHD_FILE: MSMg01no054_f21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:32 2005
         (557 letters)



>mm_chr1_23967570_23968526
          Length = 957

 Score = 1023 bits (529), Expect = 0.0
 Identities = 550/557 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgcctttgtatgaccatttactttcaaattgtaattatttaaagttacccagtttcaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 ttgcctttgtatgaccatttactttcaaattgtaattatttaaagttactcagtttcaag 260

                                                                       
Query: 61  atcagactactcacatttccaaggcattttgccccttgtaagtttagtggctcttgtagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcagactactcacatttccaaggcattttgccccttgtaagtttagtggctcttgtagt 320

                                                                       
Query: 121 attaggatccagcacatactcttttctacacatggtcctaggtgcttcttggaggatcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attaggatccagcacatactcttttctacacatggtcctaggtgcttcttggaggatcct 380

                                                                       
Query: 181 aatagatgcctacaataatagggaaattattttttaagaaagcatatcttattagactat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatagatgcctacaataatagggaaattattttttaagaaagcatatcttattagactat 440

                                                                       
Query: 241 cttatttattttataaatataaatatattagtataaatatttatatattatttattacac 300
           ||||||||| | |||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct: 441 cttatttatgtaataaatataaatatattaatataaatatttatatattatttattagac 500

                                                                       
Query: 301 ctttttatttcttatttcttattatttgtatctgtggtgtacgtatgtgcttatgttcat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctttttatttcttatttcttattatttgtatctgtggtgtacgtatgtgcttatgttcat 560

                                                                       
Query: 361 gtgcatatatgtgtgcatgtaagtgtgtgtgcatgtgtgcagaggccagaggctgaaatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtgcatatatgtgtgcatgtaagtgtgtgtgcatgtgtgcagaggccagaggctgaaatt 620

                                                                       
Query: 421 aaatgtcttcctttctaccttatttttttgaggtcttgtctcacggatcccgattcctca 480
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 621 aaatgtcttcctttctaccttatttttttgaggtcttgtctcacggaccccgattcctca 680

                                                                       
Query: 481 gttgcactatactggctagccagagaactacagggatacctctatctctaccctacccac 540
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gttgcactatactggctatccagagaactacagggatacctctatctctaccctacccac 740

                            
Query: 541 ccctcaagctggggcta 557
           |||||||||||||||||
Sbjct: 741 ccctcaagctggggcta 757


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space:   518009
Effective search space used:   518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no054_f21.g1 MSMg01no054_f21.g1 CHROMAT_FILE:
MSMg01no054_f21.g1 PHD_FILE: MSMg01no054_f21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:32 2005
         (613 letters)



>mm_chr1_24061959_24062971
          Length = 1013

 Score = 1178 bits (609), Expect = 0.0
 Identities = 612/613 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aactaagagtctactactaattaacgtaaagcctttctgtttcatgctgaaaacatacct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 aactaagagtctactactaattaacgtaaagcctttctgtttcatgctgaaaacatacct 557

                                                                       
Query: 61  ggacaaaagtaactgaagtagtaaaatcattattaatagattttcattttatgctaagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 ggacaaaagtaactgaagtagtaaaatcattattaatagattttcattttatgctaagat 497

                                                                       
Query: 121 aataaaatgatataatttaagagcattgtgccattattataaataatgtttttattacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 aataaaatgatataatttaagagcattgtgccattattataaataatgtttttattacag 437

                                                                       
Query: 181 aaatatggagtaaggagtagttttttttataattcagttatttaactgagtaaaagaata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 aaatatggagtaaggagtagttttttttataattcagttatttaactgagtaaaagaata 377

                                                                       
Query: 241 cagtacagaaatgatcatgaagcattgtttagtctctctttgatttaatttttgatttat 300
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 cagtacagaaatgatcatgcagcattgtttagtctctctttgatttaatttttgatttat 317

                                                                       
Query: 301 tttggtttgtgtaggcgtgcatgtgtatagtgtacttaatccatgaatgaggatatgaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 tttggtttgtgtaggcgtgcatgtgtatagtgtacttaatccatgaatgaggatatgaat 257

                                                                       
Query: 361 gtatttttagctttgtctcttttctggatcttctatttcatcccaaagttactgcctttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 gtatttttagctttgtctcttttctggatcttctatttcatcccaaagttactgcctttt 197

                                                                       
Query: 421 aaagttttaaacaatttatgaattttaattaacatttttatattatgccataattccatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 aaagttttaaacaatttatgaattttaattaacatttttatattatgccataattccatt 137

                                                                       
Query: 481 ttaacttggaattgtataatattggggttcagagatggctcaaggctcaagagtacataa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 ttaacttggaattgtataatattggggttcagagatggctcaaggctcaagagtacataa 77

                                                                       
Query: 541 taccccttcagaggacgcatgttttattctcagaacctttgccaggtgactcataactac 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76  taccccttcagaggacgcatgttttattctcagaacctttgccaggtgactcataactac 17

                        
Query: 601 ctgtagctccagc 613
           |||||||||||||
Sbjct: 16  ctgtagctccagc 4


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1013
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1003
Effective search space:   604809
Effective search space used:   604809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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