TTCCAGAGGATCCGCGGAATTCTATTCTTAACTTGTATACTAGGCTAACA
GTTTATGTTTATATGTTTATATGCATGCATATATTATATATAACATATAT
ATGTTAAATATATATAGTGTGCATATGTATGTACTCTGTGTGTATGTGTG
TGTTATTCATCCAAATCAAAGACAATCTATATGCAGAAGGAATTTTTAAA
GAAAATTCTGGGGCCAGATTTGTCCTAGAAGAAAAGGTAGAGGAAAAGCT
GGAGCTAAAGATATGGGTAGTTGTGGTGCTGTCAACTAAACTCAGATACT
CTACCATAAACCATCTCTCCAGTTCCCAATTTCCCTCCTATTAATTCCCT
TTCTCCAAACAGTTCACCCTTCTGCTTTCTTGTTTCTGGTGGGATGAAAT
TTGGTGGGTCACTCTGGAGACATTGCATGTGCTATATACCATCTCTGACC
CAGTAGTTTCACTACTACAAATATATGCAACAGAAACACATACATATGAA
GGCAGACTCAGCATATTGTTGGAAAACACCATCTTCAACTCATTGTGTAT
GGGTCTCAGTTACCTATAAACAGGATATAAAGGATTATCAGTAGAAATCT
GTGTAGCACCTCACAGTAGTGACCTTAGAAGCCCCTTTATAAGACTCCTT
CACACAACTTTGATAGGCTGGG

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATTTTTTACATTAAAAATGAATGTAC
CACATTTTAATAGGGTTATTTACTTCTCTGGAGTCTAACTTCTTGAATTC
TTTGTATATATTGGATATTAGTCCTTTATCACATGTAGGGTTGGCAAAGG
TCTTTTTCCAATTTGTTGGCTGCCGTTTTCTCTTATTGACAGTGTCCTTT
GCTTACAGAAGCTTTGTAATTTTATGTGGTTCCATTTGTTAATTTGAGAG
ATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATTTTT
GCTCACATCGCTTCTCCCCCCCCCACCTCGTTTTGTTGCGTTTTCTCTCT
ACTCTTCCTCTTTTGTTTTCCCCCTTCTCTTCCCATTTTTCTCTCTTTTT
TTTTCTCCCTTTCTTCTTTCTTTTTTTTCTTGTCCTCTTTTTCTCTACTC
CCACCCTTCCCAGATCTTCTCCCTGTTATCCCCTTTGTTTGTCCTTCTTT
ATTTTTCTTTATTGTTTCCCCACCCACACTCTCCCTCTCCTCTCGCCCCT
CTTTTCTTTTTATTTATTTTCTTTTTTTAATATATATCCCATGTCTCAAC
TCTTACTACCTATATATATCTACATCATAACTTCATTCTTCCCTCCTCTG
TCTATTTCCCACACGTTCATTTCTCCTCTATTTTTTACTTTAATTTTCCT
TGTTTTTTTTATTTGTTATTTTATTATTTATT

Query= MSMg01no054_j03.b1 MSMg01no054_j03.b1 CHROMAT_FILE:
MSMg01no054_j03.b1 PHD_FILE: MSMg01no054_j03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:47 2005
         (555 letters)



>mm_chr1_81519963_81520917
          Length = 955

 Score =  953 bits (493), Expect = 0.0
 Identities = 532/549 (96%), Gaps = 9/549 (1%)
 Strand = Plus / Minus

                                                                       
Query: 9   gaattctattcttaacttgtatactaggctaacagtttatgtttatatgtttatatgcat 68
           ||||||||||||||| ||||| ||||||||| ||      ||||||||||||||||||||
Sbjct: 670 gaattctattcttaatttgtacactaggctagca------gtttatatgtttatatgcat 617

                                                                       
Query: 69  gcatatattatatat--aacatatatatgttaaatatatatagtgtgcatatgtatgtac 126
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 gcatatattatatataaaacatatatatgttaaatatatatagtgtgcatatgtatgtac 557

                                                                       
Query: 127 tctgtgtgtatgtgtgtgttattcatccaaatcaaagacaatctatatgcagaaggaatt 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tctgtgtgtatgtgtgtgttattcatccaaatcaaagacaatctatatgcagaaggaatt 497

                                                                       
Query: 187 tttaaagaaaattctggggccagatttgtcctagaagaaaaggtagaggaaaagctggag 246
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 496 tttaaagaaaattctggggccagatttgtcctagaagaaaaggtagagtaaaagctggag 437

                                                                       
Query: 247 ctaaagatatgggtagttgtggtgctgtcaactaaactcagatactctaccataaaccat 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ctaaagatatgggtagttgtggtgctgtcaactaaactcagatactctaccataaaccat 377

                                                                       
Query: 307 ctctccagttcccaatttccctcctattaattccctttctccaaacagttcacccttctg 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 ctctccagttcccaatttccctcctattaattccctttctccaaacagttcacccttctg 317

                                                                       
Query: 367 ctttcttgtttctggtgggatgaaatttggtgggtcactctggagacattgcatgtgcta 426
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 316 ctttcttgtttctggtgggatgaaatttggtgggtcactctggagacattgcatctgcta 257

                                                                       
Query: 427 tataccatctctgacccagtagtttcactactacaaatatatgcaacagaaacacataca 486
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 256 tataccatctctgacccagtagtttcactactacaaatagatgcaacagaaacacataca 197

                                                                       
Query: 487 tatgaaggcagactcagcatattgttggaaaacaccatcttcaactcattgtgtatgggt 546
           |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
Sbjct: 196 tatgaaggcagactcagcatcttgttggaaaacaccatcttcaactcattctgtatgg-t 138

                    
Query: 547 ctcagttac 555
           |||||||||
Sbjct: 137 ctcagttac 129


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space:   515025
Effective search space used:   515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)