Query= MSMg01no054_j08.b1 MSMg01no054_j08.b1 CHROMAT_FILE:
MSMg01no054_j08.b1 PHD_FILE: MSMg01no054_j08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:48 2005
(564 letters)
>mm_chr1_15673316_15674279
Length = 964
Score = 1025 bits (530), Expect = 0.0
Identities = 560/586 (95%), Gaps = 25/586 (4%)
Strand = Plus / Minus
Query: 4 ggaattcattcaatgctgttgtcttaaaatggcggaactgagggtttctagggatattgt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877 ggaattcattcaatgctgttgtcttaaaatggcggaactgagggtttctagggatattgt 818
Query: 64 acccagtctgaaagcagaacaggatcct-------------------------aaatgaa 98
|||||||||||||||||||||||||||| |||||||
Sbjct: 817 acccagtctgaaagcagaacaggatcctaacagctgtctgtgtttgagtttggaaatgaa 758
Query: 99 tagttgggtgtaccagatgtttttaaaatgcagtttcctgtgggaaagggtctggatctt 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 tagttgggtgtaccagatgtttttaaaatgcagtttcctgtgggaaagggtctggatctt 698
Query: 159 accattatatgcgctctagccaacattttgaaatattaatgagaaactctgcattctgga 218
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 accattatatgcgctccagccaacattttgaaatattaatgagaaactctgcattctgga 638
Query: 219 aacaaattgattcatctatgacacgaggcttgttctcaccagtaggtgtctctgttccat 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 aacaaattgattcatctatgacacgaggcttgttctcaccagtaggtgtctctgttccat 578
Query: 279 catgctctggcccaaacacagccaggcttctcctggacctacatgttacataaaaggcat 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 catgctctggcccaaacacagccaggcttctcctggacctacatgttacataaaaggcat 518
Query: 339 cttttctttagaaatcctatactttggagagaagatataaacaacttctctttatttata 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 cttttctttagaaatcctatactttggagagaagatataaacaacttctctttatttata 458
Query: 399 ctcactttgactctgaatttggccttgcttcacattgctggttgctgaaaatgttggagg 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ctcactttgactctgaatttggccttgcttcacattgctggttgctgaaaatgttggagg 398
Query: 459 gtgttttcaagataaactcccttttcattctttggtacttaaattagcccagttgctaag 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 gtgttttcaagataaactcccttttcattctttggtacttaaattagcccagttgctaag 338
Query: 519 ctttatctctgttagataaaacggtgcatttccgagaaaaactgca 564
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 ctttatctctgttagataaaacggtgcatttccgagaaaaactgca 292
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space: 528516
Effective search space used: 528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no054_j08.g1 MSMg01no054_j08.g1 CHROMAT_FILE:
MSMg01no054_j08.g1 PHD_FILE: MSMg01no054_j08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:48 2005
(194 letters)
>mm_chr1_15581921_15582514
Length = 594
Score = 368 bits (190), Expect = e-106
Identities = 193/194 (99%)
Strand = Plus / Plus
Query: 1 tgtgtcccaaatgctaggatcaatggtgtgggtcaccatgcccagctcattttgattcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtgtcccaaatgctaggatcaatggtgtgggtcaccatgcccagctcattttgattcct 260
Query: 61 acaactgagaccctgtcttaaacatgtatcacacatttgggcacatgtaagaccaaggac 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 acaactgagaccctgtcttaaacatgtaacacacatttgggcacatgtaagaccaaggac 320
Query: 121 acaagagaatggcatgttccagaaaaacagcagttcaacttaaccagactgcagctgggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaagagaatggcatgttccagaaaaacagcagttcaacttaaccagactgcagctgggt 380
Query: 181 gagttgattcagtc 194
||||||||||||||
Sbjct: 381 gagttgattcagtc 394
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space: 108996
Effective search space used: 108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
