GGGGGGGGGGNTNTNNNNNNNGTATTCCTCCTTTTTCTCANACAACAAAA
ANNGGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XNNGNGGAATTNATATTCACAATATACTTTGGAAGGGAGNTGTGTGGATN
AAGGTNAATGAGGNTGTGTTTTAGCCCGAGGAGAGNAAATANTTTTCTAN
NNANAAATGANNAATGGTTATNAGATGTAGNATTAGGAGATAATGTGNNT
ATATGATAGGTAATGAGGTTGTTTGTTGAAATANTATATGTAGGTTGGAA
AGATGGATTAATNATAAAGNNTTTGGTATGTAAGTGNTANANANANTAGT
GANTGGNGTGANAGGANTAGTTTATTTTTTGNAGTNNNAAGGTGAAAAGT
TNANTAAAATTTAGTTTTTTGGCCCCATAGCCTCCTGGGTAACAAATGCT
CCAAACTTGTCCTTATGAATGGATCTCTGTGCTTTCTTTCATTATTGTTT
TATTATAGGTGCCTACAAGCAATGACTTGCCAAATGCCTAAGCATAATCA
AACTTTGCTTCCTGGCCTTCACCAATGCCCTAGGTAGTCGTTGAGCTGAA
CCTAGGCTTGGGATTCAGTAAGAATGTTACCAATTCAGTCATATTCATGA
TTGCCTCTAGTATTGTAAGAGAGATAGTGAAAGAAATCAGACATTACTAT
CTACTATATAGATTTAGAAATCTCAGGGAAAGCTAAGCAAAGTAAGTTTA
GAATTCTTT

CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTAGATCTGTCTATATCCAGCACCC
AAGTTTTGTGGTTACTGCCATGTTTTACAGTGCCTGGTATATAATTAATA
TTTTAGTTAAAAAAGTAGTACAATGATTTTACTACAATTATCATGACAGT
AATTTTAATTTGGAAATGAAATTGAAGAGTTTCATTACAAAATGTTTGTG
TCATATCTCTTTGTTCATATTTACTAGTAATATTCCGTTTTGTCCTGTTT
TCAACTTTTAATATCCCTACATAGTCTTCCTTTGGCTTTTATACAGATAC
CATAAATATGCATATATACATTCATATGTTTGTTATGGTTATGTACAAAC
ATAATCTTGGTGCTTCATATAGGAGCATACATGCACTATATGATTTTCTG
AAATATGCCTTACTTCAACAAACTTAATGATCTCCAATTCTATTTGTCTT
CCTGTAAATGACATAATTTGGTTTTCTATGTCTGAATAAAACACTTTATG
TGTGTTTCATTTTTTGATCCATTCATCTGTTGATAGGCACCTTAGGTGAT
TCTATATCTTGGCTGTACTAAATATTATGACAGAGAACATGAATATGTGA
ATATCTCCATTAGGCTGCATTAAATCTTTTAGGAATATGCTCATAATATA
AACCTG

Query= MSMg01no054_k15.g1 MSMg01no054_k15.g1 CHROMAT_FILE:
MSMg01no054_k15.g1 PHD_FILE: MSMg01no054_k15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:54 2005
         (621 letters)



>mm_chr1_105182568_105183588
          Length = 1021

 Score =  977 bits (505), Expect = 0.0
 Identities = 526/533 (98%), Gaps = 2/533 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagatctgtctatatccagcacccaagttttgtggttactgccatgttttacagtgcctg 60
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 532 tagatctgtctatatccagcacccaagtttcgtggttactgccatgttttacagtgcctg 473

                                                                       
Query: 61  gtatataattaatattttagttaaaaaagtagtacaatgattttactacaattatcatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 gtatataattaatattttagttaaaaaagtagtacaatgattttactacaattatcatga 413

                                                                       
Query: 121 cagtaattttaatttggaaatgaaattgaagagtttcattacaaaatgtttgtgtcatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 cagtaattttaatttggaaatgaaattgaagagtttcattacaaaatgtttgtgtcatat 353

                                                                       
Query: 181 ctctt-tgttcatatttactagtaatattccgttttgtcctgttttcaacttttaatatc 239
           || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 ct-ttctgttcatatttactagtaatattccgttttgtcctgttttcaacttttaatatc 294

                                                                       
Query: 240 cctacatagtcttcctttggcttttatacagataccataaatatgcatatatacattcat 299
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 293 cctacatagtcttcctttggcttttatacacataccataaatatgcatatatacattcat 234

                                                                       
Query: 300 atgtttgttatggttatgtacaaacataatcttggtgcttcatataggagcatacatgca 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 atgtttgttatggttatgtacaaacataatcttggtgcttcatataggagcatacatgca 174

                                                                       
Query: 360 ctatatgattttctgaaatatgccttacttcaacaaacttaatgatctccaattctattt 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 ctatatgattttctgaaatatgccttacttcaacaaacttaatgatctccaattctattt 114

                                                                       
Query: 420 gtcttcctgtaaatgacataatttggttttctatgtctgaataaaacactttatgtgtgt 479
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 113 gtcttcctgtaaatgacataatttggttttctatgtctgaataaaatactttatgtgtgt 54

                                                                
Query: 480 ttcattttttgatccattcatctgttgataggcaccttaggtgattctatatc 532
           ||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct: 53  ttcattttttgatccattcatctgttgataggcaccttaggtgcttctgtatc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space:   617721
Effective search space used:   617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)