BAC Information

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BAC

Clone NameMSMg01-054M04
Chromosome1 (Build37)
Map Location 133,674,114 - 133,674,455
singlet/doubletsinglet
Overlap genenone
Upstream geneFcamr, Pigr, Faim3, Il24, Il20, Il19, Il10, Mapkapk2, Dyrk3, Lgtn, Rassf5, Ikbke, Srgap2, LOC100042826, LOC100042821, 2700049P18Rik, Avpr1b, LOC667238, Ctse, 5430435G22Rik, Slc26a9
Downstream gene4732466D17Rik, Slc41a1, Rab7l1, Nucks1, Slc45a3, Elk4, Mfsd4, Pctk3, LOC100042221, Lemd1, EG638532, Klhdc8a, Nuak2, Tmcc2, Ripk5, Rbbp5, Tmem81, Cntn2, Nfasc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-054M04.T7 (MSMg01no054_m04.b1)MSMg01-054M04.TJ (MSMg01no054_m04.g1)
ACCAG282607AG282608
length766670
length of high quality
(start - end)
356 (100 - 455)---
definitionCHROMAT_FILE: MSMg01no054_m04.b1 PHD_FILE: MSMg01no054_m04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:01 2005CHROMAT_FILE: MSMg01no054_m04.g1 PHD_FILE: MSMg01no054_m04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGACTTTCATCCGTCTCCGNTTTTTTCCACCCAGGCCCCTTCGCCCCNNN
NNCATCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCC
GCGGAATTCAAATAATTTCTATGTCTACTTGGTTAATTTAAAGAACTTCC
TTTAGTGTTTCTTGTAAATTGAGTGTGCTAGTAACACATTATCTTAGTTT
CTATTATATGGGAATGTTTTTGTTTTTATCTTTATTTGTAAAAACTAACT
CTGCTGGATTTAGGATTCTTTGTGGCAGTCATTTCCCCCGCCCCCCCCCC
GCCCCCACCTTTGTGGACCTTGAAAGAAAACACTGTTACAAAGAACAGAG
AACAATGGACAGGATTAGGATAATTATGTAGGGAAAGGCAAGGCAAGCTT
GTTGAGTGGACACTTGTGCGAAGTGATTATGGAAGAGGTAAGAGGCTGTA
AGGGAATGTATACAGTGCCACCCCAGGCTGGTGATTATCTAGGTTGCTTA
CTGTTGCTGTGACAGCACCATGATCCAAAGCAACTTGAAGAGGTGTGTCG
GCTAGATTTTTGTCAAGTTGATCTGAGAAGAGGAACCCTCACTTGAAAAA
ACACCTTCAACAGAAAAAAAGCCTATGGGGCATTTCATGGATTGATGTTT
GCTGTGGGTGGTACCACCCTGGGCTGGTGAATGGTATCACAAGCATGCCT
GAACTTTGATTCTGGAGAGCATACTGGGTAATTCTCCTGTCCTGCCTGGC
TTCCTGCCTTCTGTTN
NNNNNNNNNNNNNNNTTTTCNNNNNNNCNCCNCNNNNNNNCCAAAAAANN
GNNAAACCTNNCNCCGCCNGTGCCAAAAATTTANNTNAACTANNCAATTC
TCCCCCGNNAATCACAAACCCATCTTATTAAACCCCNNGACCTANANNNN
TTCNCANNCCACCANCCNNNNNATAACCANCCANNNCATCNNAAANTCTC
TTTTTATTTTTTTTTTCCCNNNNANCNCCCNNCCANNNNCCCTTATAAAA
TTATAATTTAACNNCCTCAAACCCCCNNCCCCANCCNCTATTAAACCATT
ATCACCCCCCCGNNNNNNNNNNNNNCNNCCCNNNNCNNACNNNCACCCCC
CCCCCCCCNNATAAAAANNCCCCCCCCCCCCAAAACCCCACCCTAAAAAA
CCCCTATAATATTTATTTTTTTTTTCTCCCCCCNNNNNNNNNNTTTTTTT
TAACAANCCANCCCCCCCCCCCCCCCCNCCCCCCCCCCCCCCCATCCNNN
NACATTTTAAAACAAAAATTTCACAAAAAAACCCCCCNCACNNACNCCCC
CNAAAAAAAANNNCCNAACCAAACCCACCCNNNNNNCANCNTATCTCCCC
CCCCTCCCTATAATATATTAATTCTCCTNNNNNNTNNNCCCCAAATATTA
TACTATTTTATATTATCATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no054_m04.b1 MSMg01no054_m04.b1 CHROMAT_FILE:
MSMg01no054_m04.b1 PHD_FILE: MSMg01no054_m04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:01 2005
         (356 letters)



>mm_chr1_133673707_133674462
          Length = 756

 Score =  607 bits (314), Expect = e-178
 Identities = 339/352 (96%), Gaps = 10/352 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaaataatttctatgtctacttggttaatttaaagaacttcctttagtgtttctt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 gaattcaaataatttctatgtctacttggttaatttaaagaacttcctttagtgtttctt 690

                                                                       
Query: 65  gtaaattgagtgtgctagtaacacattatcttagtttctattatatgggaatgtttttgt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 gtaaattgagtgtgctagtaacacattatcttagtttctattatatgggaatgtttttgt 630

                                                                       
Query: 125 ttttatctttatttgtaaaaactaactctgctggatttaggattctttgtggcagtcatt 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |
Sbjct: 629 ttttatctttatttgtaaaaactaactctgctggatttaggattctttgtggcagtc--t 572

                                                                       
Query: 185 tcccccgccccccccccgcccccacctttgtggaccttgaaagaaaacactgttacaaag 244
           |    || ||||||    ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 t----cgtcccccc----cccccacctttgtggaccttgaaagaaaacactgttacaaag 520

                                                                       
Query: 245 aacagagaacaatggacaggattaggataattatgtagggaaaggcaaggcaagcttgtt 304
           ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||
Sbjct: 519 aacagagaacaatggacaggattaggataaggatgtagggaaaggcaaggcaagcttgtt 460

                                                               
Query: 305 gagtggacacttgtgcgaagtgattatggaagaggtaagaggctgtaaggga 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 gagtggacacttgtgcgaagtgattatggaagaggtaagaggctgtaaggga 408


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 756
Length adjustment: 9
Effective length of query: 347
Effective length of database: 747
Effective search space:   259209
Effective search space used:   259209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)