Query= MSMg01no054_p10.b1 MSMg01no054_p10.b1 CHROMAT_FILE:
MSMg01no054_p10.b1 PHD_FILE: MSMg01no054_p10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:16 2005
(588 letters)
>mm_chr1_62202836_62203822
Length = 987
Score = 998 bits (516), Expect = 0.0
Identities = 555/568 (97%), Gaps = 3/568 (0%)
Strand = Plus / Plus
Query: 22 gaggaggggattctggatacagcttgtgtcgagggccattgctctcccattgttggtgtt 81
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 222 gaggaggggattctggatacagcttgtgtggagggccattgctctcccattgttgttgtt 281
Query: 82 gttgttttggggtttttcgggtttgcttttgttttttaaggaaagaaaataagcacaaaa 141
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 gttgttttgggatttttcgggtttgcttttgttttttaaggaaagaaaataagcacaaaa 341
Query: 142 cactaaatccttgcaaacaaaaagacaaacaaaaaaatgttaattttactttataatagc 201
||||||||||||||||| |||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 342 cactaaatccttgcaaa-aaaaagacaaacaaaaaa-tgttacttttactttataatagc 399
Query: 202 aattaaattttaaaaattaaaaatagattttttttt-actaaaaataatacacttctata 260
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 400 aattaaattttaaaaattaaaaatagattttttttttactaaaaataatacacttctatt 459
Query: 261 tcataacaaagatagctaaatagctaaaggcaaaagagattcagaatgtgaggagaggag 320
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 460 tcataacaaagatagctaaatagctaaaggcgaaagagattcagaatgtgaggagaggag 519
Query: 321 aattttagtgattagtggtgagacagcaagacggtgagacctcaggattagcgggagcac 380
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 520 aattttagtgattagtggtgagacagcaagacggtgagacctcaggattagtgggagcac 579
Query: 381 agagctgcacaaggactggatactagagtcttaagtgatggctccatgaacaagaaacag 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 agagctgcacaaggactggatactagagtcttaagtgatggctccatgaacaagaaacag 639
Query: 441 ttgttgctcctcttatcctgctgagaaactgaatttttagcatcttttaacactgccaat 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 ttgttgctcctcttatcctgctgagaaactgaatttttagcatcttttaacactgccaat 699
Query: 501 gaactggctactcctatcctatgaaactacagtattaattgttaggtccgataagcttta 560
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 700 gaactggctactcttatcctatgaaactacagtattaattgttaggtccgataagtttta 759
Query: 561 tctcaaataaggcagctctcgccaccag 588
||||||||||||| ||||||||||||||
Sbjct: 760 tctcaaataaggcggctctcgccaccag 787
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 987
Length adjustment: 10
Effective length of query: 578
Effective length of database: 977
Effective search space: 564706
Effective search space used: 564706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no054_p10.g1 MSMg01no054_p10.g1 CHROMAT_FILE:
MSMg01no054_p10.g1 PHD_FILE: MSMg01no054_p10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:16 2005
(282 letters)
>mm_chr1_62319284_62319965
Length = 682
Score = 514 bits (266), Expect = e-150
Identities = 278/282 (98%)
Strand = Plus / Minus
Query: 1 tttagaacactgaaataaactatttttaaaaacactgtggaaaaacccaaatggatgaca 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 482 tttagaacactgaaataaactatttttaaaaacactgtggaaaaatccaaatggatgaca 423
Query: 61 ggcacaaaaattaggggtctttctccaaatattctctgacacagatgcctatctttagga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ggcacaaaaattaggggtctttctccaaatattctctgacacagatgcctatctttagga 363
Query: 121 tcaacgacaaatgaacaaacataatgaaaaagagagggtgcggcaatgacttaattaata 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 362 tcaacgacaaatgaacaaacataatggaaaagagagggtgcggcaatgacttaattaata 303
Query: 181 gaacacattttatttaaaaggttaaatttggaacaatcatcttttctgcacatgcttggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 gaacacattttatttaaaaggttaaatttggaacaatcatcttttctgcacatgcttggt 243
Query: 241 gctgttaagcaatttaaataacagtggcaaatgagaaaatga 282
|||| ||||||||||||||||||||||||||||||||||||
Sbjct: 242 gctgggaagcaatttaaataacagtggcaaatgagaaaatga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space: 183729
Effective search space used: 183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
